KEGG   Xenopus tropicalis (tropical clawed frog): 101731976
Entry
101731976         CDS       T01011                                 
Symbol
col20a1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
  KO
K24357  collagen type XX alpha
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
SSDB
Motif
Pfam: fn3 VWA Collagen Pur_ac_phosph_N VWA_2
Other DBs
NCBI-GeneID: 101731976
NCBI-ProteinID: XP_031750574
UniProt: A0A803K045
Position
10:complement(2124194..2172277)
AA seq 1361 aa
MKNGAALLLVITMAMARIRWSSQTQGPPRLRLAVLSEDRLQMKWKEAEGLSSGYKVLVKP
VTGDPEQEVMLKTKTPKVTVGGLAPEKEYILQIHVIQGGQDVLLAKRRFIIEDLKAQGRG
SKKPDEEGPVVPRPNETVNSPTLEAGLGASDREAEQVLPPAKGSQSPEWKKLSPANSTLP
PRTAQRNQSQADRELLETPGPPKKGWGPQYLCDTVLEWDIVLLIDSSWSVGRTNFRLVKN
FLGGILSPLPISRDKIRIGASQYSGEPHTEWDLNAYGSKAEVLEAVKRLKYRGGNTFTGL
ALTHVLEENLRAAAGAREHAGKVLVLLTDGKSQDDAISVAQMLKEAGIYIFTIGVKNADE
VELREMASGPPDLTVHIVADFPLLSPLVGQVARALCVRLKVKRREEELGAHSVALQDLAD
PHPSPTHLVVSEVTAKSMRLSWTPPHHQVRKYRIVYYPSRGGTPQEVVLDGAASTSVLSN
LTSRTDYLVSVFPIYGSGVGSGLRGITSTLPLPAPRSLEAEQVTDTTIGLRWHASEEAAQ
YLVLCAAQSDPVEKASEVKVAGTEVLLSGLAPSTHYSLTVYAVSGDEMSDPSFLQQITEP
PVPPRDLRFSEVAHSSVAVHWQSPSSDGKPHRVSYSPAPGSSGRQEEEVPGGSSSVTLKS
LLSQTFYSVTVTGWHGGAVTGNVTTLKVPPPTGLSVTHLSGDRAKATWDQGEPDVTSYLI
KWMPLSGGKLSQVSVPGGQKMALLSGMEYNTEYQVSISALYVDGALSDASSGRYRTEVLP
GKLPAEHGALFPVMPDGTCPRANMEDGADALLGYNMMAAFSLDEKRYASVSGVSIGAFVL
GGARIYTLSESAELTIWTRDFHPGGIPPEHTLSFLLRLPPYSAREPFSIWQITDEDFQPV
LGVILNPTEKSLTYFNPGPEGSVQQVTFLQHEVQRIFYGNFHKVQVAVGRGAVRLYIDCQ
KVAEKSIRGMGHVTTRGFEMLGKLTRTRGLRSGSAAIQLQSFWIICGDDWPERDTCCDVL
GKRDESTCPAPPASCTCSSAEAGPPGLPGPPGPAGLRGAKGEQGHPGPKGEPGNRGPWGL
DGPGGHLGSPGLQGTSATGPMGPPGIKGEKGDTGSPGLQGLPGAEGMLGRDGIMGPKGIR
GVEGTTGLPGPPGPRGLPGVSGIKGTPGDKGPVGAVGPTGLPGPRGEKGEKGEPQSAATI
YHLVNQVCERLIQAHMMKLDTVVGEPERQPVPVWDEHLRRGEPGPPGLPGPPGERGELGV
IGESGQPAGNGYPGERGEQGPKGGKGDTLSGRDGPQGAPGASAPPGTEVFGKPGPIGSPG
IQGPSGAPGSNGQQGPPGLPGICDSAPCNVADTGGSVDLIP
NT seq 4086 nt   +upstreamnt  +downstreamnt
atgaagaatggagctgccctactgcttgtcatcaccatggcaatggcccggatcaggtgg
agcagtcagactcaaggccccccgcggttgcgcctggccgtactctcggaggaccgactg
cagatgaagtggaaggaggccgaggggctcagcagtgggtacaaagtgctggtaaaaccg
gtgactggggaccccgaacaagaggtgatgctgaaaaccaaaacccctaaagtgacggtg
gggggcctggcccccgagaaggaatatatcctacagatccatgtgatccagggggggcag
gatgtgctgctggccaagaggcgcttcattatagaagatttaaaggcgcagggaaggggc
agcaagaagccggatgaggaggggcctgttgtgccccgccccaatgagactgtgaactcc
cccaccctggaggcgggccttggagcttcagacagggaagcggagcaggttttgcccccg
gccaaaggctcccagagcccagagtggaagaagctgagcccagcgaattcaaccctcccc
cccagaacagcccagcggaaccagtcccaggccgacagggaactgctggagacccccggc
ccccccaagaaaggctgggggccccagtacctctgtgacacggtgttggagtgggacatt
gtgctccttatcgacagttcctggagtgtgggcagaaccaacttcaggctggtcaagaac
ttccttgggggaatactcagccctctgccaatctcccgggacaagatccggataggtgcc
tcccagtacagcggggaaccccatactgaatgggacctgaacgcctacggttctaaggcc
gaggtgctggaggcagtgaaaagactgaaatacagaggaggaaacactttcactgggttg
gctctcacccacgtgttggaggagaatctgagggcggcggccggtgccagggaacacgcg
ggcaaagtgctggttctgctgacggacgggaagtcccaggacgatgccatctcggtggcg
cagatgttgaaagaggccggaatctatatattcactattggggtcaaaaatgccgatgag
gtggagctgagggaaatggcgtcggggcccccggatctgactgttcacattgtggccgat
ttcccccttctcagccccctggtggggcaagtggcccgggctctctgtgtgaggctgaag
gtgaagaggagggaagaggagttgggggcccatagtgtggccctacaggatctcgctgac
ccccaccccagccccactcacctggtggtctcggaagtgacagccaagtctatgcgtctc
tcctggacgcctccgcatcaccaagttcgcaaatatcggattgtgtattacccatcgcgg
ggagggaccccccaggaggtggtattagatggcgctgcctccacttctgtccttagcaac
ctgacctcacgcacagactacctggtgtccgtattccccatctatggcagcggcgttggc
tctgggctgcggggcatcacttccacactgcctctgcctgccccacgctccctggaggcg
gagcaagtgacggacaccaccattgggctgcgctggcacgcctccgaggaagctgctcag
tacctggttctctgcgctgctcagtccgacccagtagagaaggccagtgaggtgaaggtg
gcaggcaccgaggttctgctgagcggactggcacccagcacccactatagtctgacagtc
tatgcagtgtccggggatgaaatgagcgacccgtccttcctacagcaaatcacagagccc
cccgtccccccccgggacctgcgcttctccgaagtcgctcacagcagtgtcgccgtgcac
tggcagtcgccctcgtctgacgggaaaccccaccgcgtctcctactcacctgccccgggc
agctcagggcgccaagaggaggaggttcctgggggctcctcgtcggtgaccctgaagtcg
ctgctctcccagacgttctactcggtgactgtgaccggctggcacggaggggcagttact
gggaatgtgaccacgttgaaggttccgcccccaactgggctgagtgtgacccacctctcc
ggggacagagccaaagcaacatgggatcaaggggaacccgacgtcacctcttatttgatc
aagtggatgcccctgagcgggggcaaactgagccaggtgtcggtgcccggggggcagaaa
atggctttattgtccgggatggagtacaacacggagtatcaggtctcgatctcagctctg
tatgtggatggggccctcagcgacgcctcttctgggaggtaccgcacagaggttcttcct
gggaaacttccagcagaacacggggctttattcccagtgatgccggacgggacctgcccc
cgggcaaacatggaggatggcgctgacgctctattggggtacaacatgatggcagcgttc
agcctggacgagaaacgttacgcgtcggtgagcggagtttccatcggggcctttgtattg
ggcggagccaggatttataccctgtctgagtctgcagagctgaccatctggaccagagac
ttccaccccggcgggatccccccggaacacaccctcagcttcctgctccgattgcccccc
tactcggcccgggagcccttctctatttggcagatcacggatgaagatttccagccagtc
ctgggagttattctaaacccaaccgagaaatctctcacctacttcaaccccggccccgag
ggctccgtccagcaggtcactttcctacagcacgaggtccagcggatattctatgggaat
ttccataaggtacaggtggcggttggcaggggggccgtccggctgtacattgattgccag
aaggtggcagagaagagcattaggggaatgggccacgtgaccaccagagggtttgagatg
ttggggaaactgacaaggactcgggggctgaggagcggctcagcagcaatccaactccag
tccttctggatcatctgtggtgatgactggccagaaagagacacctgctgcgatgtccta
gggaagagagacgaaagcacctgccctgccccccctgcctcctgtacgtgcagttcagcg
gaagctggccccccaggccttccgggacccccaggacccgcaggactgagaggcgctaaa
ggggaacagggacatcctggaccaaagggtgaaccggggaatcgtggcccctggggactt
gatggtcctggagggcatttgggctcccctggcctgcaagggacgtctgctactggccca
atgggccccccaggaataaaaggagaaaaaggggacacaggaagtcctgggctgcaggga
ctgcctggtgccgagggaatgttggggagagatggaattatgggacccaagggcattcgg
ggagtggaggggacgacggggctccctgggcctcctgggccaaggggactgccaggcgtc
tcagggatcaaaggcaccccaggggataaaggcccagtgggagcagttggaccaacaggt
cttccaggacctcgaggagagaaaggggagaagggggagccccagtctgcggccacaatc
taccacttagtcaatcaggtgtgtgaaagactcattcaagcgcacatgatgaaactggac
accgtcgttggggaacctgagaggcaaccagtccctgtgtgggacgagcatctaaggaga
ggagaacctgggcctcctggtttacctgggcctcctggagaaagaggggaactgggggtg
attggggaatcaggacagccggctggaaacggataccccggggagcgaggagaacaaggc
cctaaaggagggaaaggagatacattatcaggtagagacggccctcagggggccccaggt
gcttcagctcccccagggaccgaggtgtttgggaaacctggccccattggctcccctgga
atacaagggccctcgggagcccctggaagcaatggacaacaaggaccacccgggctgcct
ggaatctgtgactccgccccatgtaatgtggcagatacggggggttccgtggatctcatc
ccctga

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (23)   

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