KEGG   Xenopus tropicalis (tropical clawed frog): 394520
Entry
394520            CDS       T01011                                 
Symbol
bcas2
Name
(RefSeq) pre-mRNA-splicing factor SPF27
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    394520 (bcas2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    394520 (bcas2)
   03400 DNA repair and recombination proteins [BR:xtr03400]
    394520 (bcas2)
Spliceosome [BR:xtr03041]
 Complex B
  Other components
   Prp19 complex
    394520 (bcas2)
 Complex C
   Prp19-CDC5 complex
    394520 (bcas2)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    394520 (bcas2)
SSDB
Motif
Pfam: BCAS2 THOC7
Other DBs
NCBI-GeneID: 394520
NCBI-ProteinID: NP_988924
Xenbase: XB-GENE-959514
UniProt: Q6PBE2
Position
6:7009579..7015877
AA seq 223 aa
MAGTSLVAGDVVVDALPYFDQGYDAQGVREAAAALVEEETRRYRPTKNYLSYLPTPDYSA
FETEIMRNEFERLSSRQPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVR
IENLELMSQHGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQRKNSQLTAGARLRE
MESTWVSLVSKNYEIERAIVQMENEVYQLKERSGENKENIEDY
NT seq 672 nt   +upstreamnt  +downstreamnt
atggcggggaccagtctggttgccggggatgttgtggtggatgcgctgccctatttcgat
cagggctatgatgcgcagggagtgcgggaagcggctgcagctttggtggaagaggagacc
agaagatatcggcctacaaagaactacctgagttacttgcccacccccgactattcagca
tttgagactgaaatcatgaggaacgagtttgaaagactttcgtcgcgccagcccctcgaa
ctgctcagcatgaagaggtatgagttaccggcccccctatccggccagaggaacgacatc
accgcgtggcaggaatgtgtcaataactccatggcccaattggaacaccaggccgtccgt
atagagaacctggagctcatgtcccagcacggctgtaacgcctggaaagtctataacgag
aacctgctgcatatgatcgactgcgcgcagaaagatctccagaagttacggaaaaagatt
caggacttgaactggcagagaaagaactcccagctgacagcaggtgcccgactcagagag
atggagtcaacgtgggtgtctcttgtgagcaaaaactacgagattgagagagcaattgtg
caaatggagaatgaagtctatcagctgaaagagaggagcggggagaataaggaaaatatt
gaagattattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (20)   

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