KEGG   Xenopus tropicalis (tropical clawed frog): 394721
Entry
394721            CDS       T01011                                 
Symbol
sf3b4
Name
(RefSeq) splicing factor 3B subunit 4
  KO
K12831  splicing factor 3B subunit 4
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    394721 (sf3b4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    394721 (sf3b4)
Spliceosome [BR:xtr03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    394721 (sf3b4)
 Complex B
    394721 (sf3b4)
 Complex C
   U2 SnRNP specific factors
    394721 (sf3b4)
SSDB
Motif
Pfam: RRM_1 RRM_7 OB_RNB
Other DBs
NCBI-GeneID: 394721
NCBI-ProteinID: NP_989116
Xenbase: XB-GENE-492933
UniProt: Q6P872
Position
8:complement(128882418..128890427)
AA seq 388 aa
MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE
FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTF
SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK
DSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSVPAVITSLTSAVAAGMPTFPP
VPPPGAMPPGIPPSMPPPPMSPVTGAGQAAAAAPQVPLPFQSAAMHPGMQMQMPHPSIPG
ASPLGTRPPGMGPPGPPPMGMPPRAPPFGAMGHPGMPPGMRPPPLMPPYNGPPRPPPYGY
QRAPVPLPRPAPRPPAPPRPPMRLPMSQ
NT seq 1167 nt   +upstreamnt  +downstreamnt
atggcggctgggccgatatctgaacggaaccaggatgccacagtgtatgtcggaggcctg
gatgaaaaggtgtctgagcctcttctatgggagctcttcttgcaagcagggcctgtagtg
aatacacacatgcccaaagacagggtcacggggcagcatcaaggttatggctttgtggaa
tttctgagtgaggaggatgccgactacgccataaagattatgaacatgataaagctctat
gggaaacccattagagtaaataaagcctcggcgcacaacaaaaacctggatgtcggcgcc
aacatcttcattggaaacttggacccagagattgatgagaagttgctttatgacaccttc
agcgcttttggtgtaatcttgcagacccccaagatcatgagagacccagacaccggcaac
tccaaaggttatgccttcatcaactttgccagttttgatgcttcggacgcagccattgag
gccatgaacggacagtacctgtgcaacaggcccatcaccgtctcctatgctttcaagaag
gactccaaaggagagcggcatgggtcggccgcagagagactgctggctgcccaaaaccca
ctttcacaggctgaccggcctcaccagcttttcgccgatgcccctccacctccgtctgta
ccagctgtcattacatcattaacaagtgcagttgctgcaggcatgcccacatttcctcct
gtccctccacctggtgcaatgccgccgggtatcccaccctcaatgccgcctcctccaatg
tctcctgtcacaggcgccgggcaagcagctgcagctgctcctcaagtcccacttcctttt
cagtctgcagctatgcatccaggtatgcagatgcagatgcctcacccctctatcccagga
gcatcgccgcttggaacacgtccacctggaatgggaccaccaggaccccctcctatggga
atgccaccaagagcgccaccgtttggagccatgggtcacccaggcatgcctccaggtatg
aggccaccacccctgatgccaccatacaacgggccacctcgacccccaccatatggttac
caacgtgccccagtacccttaccccgaccggccccacgcccaccagcaccacctcgacct
ccaatgaggctccctatgtcacaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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