KEGG   Xenopus tropicalis (tropical clawed frog): 394977
Entry
394977            CDS       T01011                                 
Symbol
plrg1
Name
(RefSeq) pleiotropic regulator 1
  KO
K12862  pleiotropic regulator 1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    394977 (plrg1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    394977 (plrg1)
   03400 DNA repair and recombination proteins [BR:xtr03400]
    394977 (plrg1)
Spliceosome [BR:xtr03041]
 Complex B
  Other components
   Prp19 complex
    394977 (plrg1)
 Complex C
   Prp19-CDC5 complex
    394977 (plrg1)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    394977 (plrg1)
SSDB
Motif
Pfam: WD40 NBCH_WD40 ANAPC4_WD40 DUF5888 WDR54
Other DBs
NCBI-GeneID: 394977
NCBI-ProteinID: NP_001032331
Xenbase: XB-GENE-964754
UniProt: A0A803KJQ0
Position
1:54553625..54572279
AA seq 517 aa
MSQREWGVVEDVQKHSVHTLIFRSLKRTHDMFVADNAKPIPIDEESHKLKMSVKLRTEYS
SVLHMPVLKENREKGHHEAYEHYTAHQGTESEYMLTGTHPYPSGPGVALTADTQIQRMPS
ESAAQSLALALPPSQSRLEAQRTAASVGDIYRHAGHPERSQPPGLSMASMESGGTKNSAL
VAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCLAVEPGNQWFVTGSADRTIKIWDLASGK
LKLSLTGHISTVRGVIVSGRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLH
PTIDVLVTCSRDSTARIWDVRTKAGVHTLVGHTNAVATVRCQAAEPQIITGSHDTTIRLW
DMVGGKTRVTLTNHKKSVRAVVLHPRQYTFASGSPDNIKQWKFPDGNFIQNLSGHNAIIN
TLAVNSDGVLVSGADNGTMHLWDWRTGYNFQRIHAAVQPGSLDSESGIFACTFDQSESRL
ITAEADKTIKVYREDETATEETHPVSWKPEIIKRKRF
NT seq 1554 nt   +upstreamnt  +downstreamnt
atgtctcagcgagaatggggggtggtggaggatgtgcagaagcactctgtccacacactt
atcttcaggtctttgaagcgcacccatgatatgtttgtggccgacaatgccaagccaatc
ccaattgatgaggaaagccacaagttaaagatgtctgtaaagctacgcacagagtacagc
tccgtcttacacatgccagttctgaaggaaaatcgagaaaagggccaccatgaagcatat
gagcattatacagcacatcaagggactgaatcagaatacatgttaactggaacacaccca
tacccttcaggcccaggtgtggcgttaacagctgatactcagatacagagaatgccaagt
gaatcagcagcccaatctttagccttggctcttccaccatcacagtccaggttagaagct
cagcgtactgctgccagtgtcggagatatttacaggcacgctggacatcctgaacgttcc
cagcctccaggattatcaatggcttccatggagtctggaggtaccaaaaactctgcactt
gtagcaaagaaagctcctaccatgcctaaaccccagtggcacccaccttggaaactgtac
agggttattagtggccacttaggctgggtgagatgtcttgcagtagaacctggaaaccag
tggtttgtaacaggctcagctgacagaacaattaagatatgggacctggcaagtggtaaa
ttaaagctgtctctgacagggcacataagcactgtccgaggggtgattgttagtggcaga
agtccatacttgttttcttgtggggaggacaagcaggtcaagtgctgggatctggaatat
aataaggttattaggcactaccacggtcatcttagtgcagtctatggtctggatctgcat
ccaactatcgatgtgcttgtaacttgcagcagagactccactgcacgtatctgggacgtc
aggacgaaagccggtgtgcataccctagtgggacacaccaatgctgttgcaactgttaga
tgccaagctgcagaacctcagatcataacaggaagccatgacaccacaataagactgtgg
gatatggttggtggtaagacgcgggtaactttaacaaatcacaagaaatctgtcagagct
gtagtactgcatccaagacagtacacatttgcatctgggtcaccagataatattaagcag
tggaaattccctgacggtaacttcatccagaacctttctggccataatgctataattaat
acattggcagtgaattctgatggcgtgctggtgtctggagctgataatggaacaatgcac
ctgtgggactggcggacaggttacaattttcagagaattcacgctgctgttcagcctggc
tctctagacagcgaatccggtatttttgcttgcacatttgaccagtcagaaagcaggtta
atcactgctgaggctgataaaactatcaaagtctacagggaggatgaaactgcgactgaa
gagacccatccagtcagctggaaaccagaaattattaaaaggaagagattttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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