KEGG   Xenopus tropicalis (tropical clawed frog): 448163
Entry
448163            CDS       T01011                                 
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
  KO
K11650  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    448163 (smarcd1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xtr03021]
    448163 (smarcd1)
   03036 Chromosome and associated proteins [BR:xtr03036]
    448163 (smarcd1)
Transcription machinery [BR:xtr03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     448163 (smarcd1)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    448163 (smarcd1)
   PBAF complex
    448163 (smarcd1)
   GBAF(ncBAF) complex
    448163 (smarcd1)
SSDB
Motif
Pfam: SWIB SusD_RagB
Other DBs
NCBI-GeneID: 448163
NCBI-ProteinID: NP_001004862
Xenbase: XB-GENE-491104
UniProt: Q6GL18
Position
2:148801972..148816644
AA seq 508 aa
MAARAGFQSVTPGGSGSATAALGPGTPGPAVRMGPAPGQGMYRSPMPGAAYPRPGMLPGS
RMTPQGPAMGPPGYGGSPAARPGMAQSGMDQSRKRPAPQQIQQVQQQAAQNRNHSAKKKK
MADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFIS
NTFNPAKSDAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKRKFSSFFKSLVIELDKD
LYGPDNHLVEWHRTPTTQETDGFQVKRPGDMNVRCTVLLMLDYQPPQFKLDPRLARLLGI
HTQTRPVIIQALWQYIKTHKLQDPHEREFIICDKYLQQIFESQRMKFSEIPQRLHALLMP
PEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDNKIHET
IETINQLKIQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWA
QEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq 1527 nt   +upstreamnt  +downstreamnt
atggcggcgcgggctggattccaatcagtgaccccgggggggtccggttcagctacggct
gctctgggtcccggtacccctggcccagcggtaagaatgggccctgcccctgggcagggg
atgtaccgctctccaatgcctggagctgcttacccgagacctggaatgcttccaggtagc
cgaatgactcctcagggaccagcaatgggcccccctggttatggtggaagtccagctgct
cggccaggcatggcccaatcaggcatggaccagtctcggaaacgtcctgcaccccagcaa
atacagcaggtgcaacaacaggctgctcagaataggaaccatagtgctaaaaagaagaaa
atggctgataagatactacctcagaggataagggaactggtacccgaatctcaggcttac
atggatctgttagcgttcgagagaaagctggatcaaacaatcatgaggaaacggcttgat
attcaggaggctttgaagagaccaataaagcaaaagagaaaacttcggatcttcatttca
aatactttcaaccctgcaaaatcagatgctgaagatggagagggaactgttgcctcatgg
gagctgcgggtggagggccgtctccttgaggatgcggcactttctaaatatgatgctacc
aaacagaagagaaagttctcatctttttttaagtcactagttattgagctggataaagac
ctgtatgggccggataaccacctggtggagtggcacagaactcctacaacacaggagact
gatggttttcaggtgaagcgccctggggatatgaacgtgcgctgcaccgtgttactgatg
cttgactatcagccaccacaatttaaacttgatccccgactggctcgcctccttgggatt
cacactcagactcgtccagtcatcattcaagctctttggcagtacattaagactcacaaa
cttcaagaccctcatgaacgggagtttattatatgtgacaagtatctgcagcagatattt
gagtctcaaaggatgaagttttcagagatcccacagagattgcatgccctcctcatgcct
ccagaaccaattataatcaatcatgtcattagcgttgaccctaatgatcagaagaaaact
gcttgttatgacattgatgtagaagttgatgataccctaaaaactcagatgaactccttc
ctgttgtccactgcgagtcagcaggagatagctgctctagataacaagattcacgaaaca
attgaaactattaatcagttgaaaattcagagggaatttatgttgagctttgcccgtgac
cctcaaggatttattaatgactggttacagtcacagtgccgggacctcaaaacaatgact
gatgtggtaggtaatcctgaagaagaacgccgagctgagttttacttccagccatgggct
caggaggctgtgtgccggtatttctactccaaggtgcaacaaagacgtcaggagcttgaa
caggctctcgggatccgaaatacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

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