KEGG   Xenopus tropicalis (tropical clawed frog): 448543
Entry
448543            CDS       T01011                                 
Symbol
smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082  ATP-dependent chromatin remodeling
xtr03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    448543 (smarcb1)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    448543 (smarcb1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:xtr01009]
    448543 (smarcb1)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xtr03021]
    448543 (smarcb1)
   03036 Chromosome and associated proteins [BR:xtr03036]
    448543 (smarcb1)
Protein phosphatases and associated proteins [BR:xtr01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     448543 (smarcb1)
Transcription machinery [BR:xtr03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     448543 (smarcb1)
    SWI/SNF complex
     448543 (smarcb1)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    448543 (smarcb1)
   PBAF complex
    448543 (smarcb1)
   SWI/SNF complex
    448543 (smarcb1)
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd DUF1679
Other DBs
NCBI-GeneID: 448543
NCBI-ProteinID: NP_001006819
Xenbase: XB-GENE-493598
UniProt: Q6DFM1
Position
1:complement(153149167..153171077)
AA seq 378 aa
MIMALSKTFGQKPVKFQLEEDGEYYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERK
KIVASSHGKKYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR
NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENAAQSEVLV
PIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIES
YPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEF
VTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRD
QDRNTRRMRRLANTAPAW
NT seq 1137 nt   +upstreamnt  +downstreamnt
atgatcatggcgttaagtaaaacgtttggccaaaagccagtgaaatttcaattggaagag
gatggagaatactacatgataggatccgaggtgggaaattacttgcgcatgttcagggga
tcattatataaacggtacccttccctttggagacggttggcaacagtagaagagaggaag
aaaatagtagcgtcttctcatggaaagaaatatcatggatataccactttagctaccagt
gttactctcttaaaagcttcagaagttgaagagatccttgatgggaatgatgagaaatat
aaagcagtctctattagcacagaaccaccaacctacctcagggagcaaaaggcaaagcga
aatagccagtgggttccaactctacccaacagctcccaccacctggatgcagtgccttgc
tctactactataaacaggaatcgtatgggccgagacaagaaaaggacatttccactgtgc
tttgatgaccatgatccagcagtcattcatgaaaatgctgctcagtcagaagtcctggtt
cccattcgattagacatggaaattgatgggcagaagcttcgagatgcctttacgtggaac
atgaatgagaagttgatgactccagaaatgtttgctgaaattctctgtgatgaccttgac
ttaaatcctctggcttttgttcctgccattgcttcggctatccgccagcaaatagaatca
tatccaactgacagcatcctggaagatcaatctgaccagagggtcatcatcaagctcaat
atccatgttggaaacatttctttggtagaccagtttgagtgggacatgtccgaaaaggaa
aattccccagaaaaatttgctctaaagttatgctcagaacttggacttggtggggagttt
gttactactattgcttacagtattcgagggcagctcagctggcatcagaagacatatgca
ttcagtgaaaacccactgccgacagtagagattgctattcgaaatacaggcgatgctgac
cagtggtgccccctcctggagaccctcactgatgccgaaatggagaagaagatccgggac
caggaccggaacaccaggcgtatgagacgtcttgccaacactgcaccggcttggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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