KEGG   Xenopus tropicalis (tropical clawed frog): 448589
Entry
448589            CDS       T01011                                 
Symbol
cavin1
Name
(RefSeq) polymerase I and transcript release factor
  KO
K19387  polymerase I and transcript release factor
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xtr03021]
    448589 (cavin1)
Transcription machinery [BR:xtr03021]
 Eukaryotic type
  RNA polymerase I system
   Other transcription-related factors
    Transcription termination factors
     448589 (cavin1)
SSDB
Motif
Pfam: PTRF_SDPR DUF1647 DUF1664 TMP_2
Other DBs
NCBI-GeneID: 448589
NCBI-ProteinID: NP_001005049
Xenbase: XB-GENE-996120
UniProt: Q6DF18
Position
10:6350884..6379222
AA seq 371 aa
MADTTLQIIEQPTTPETPPEETVDDTSEPSEPIKADQINGVMVLSLLDKIIGAVDQIQLT
QTQLEERQQEMENVVGSIQGELAKLSKSHATTSNTASKMLEKVRKVSVNVKTVRHNLEKQ
AAQIKKLESNESELLRRRNFKVMIYQDDVKLPSKLSISKTLKDTEKQDVAEEGQQNEKKD
EEEGEEHIELSSDEEVEVEEIIEESRAERIKKSGMRRVDDIKKAFSKEKMKKTKVKTKEN
LEKTRQNLEKTKHNIEKRMNKLGTKIVTTERREKMKTSKDKLKKSFTPDHVVYARSKTAV
YKVPPFTFYVKKIRDGEVEVQATEMVEVGPDGEEEEGEGAELLRGESPDPHSLLQITEDA
DAVVGERSDSD
NT seq 1116 nt   +upstreamnt  +downstreamnt
atggcggacacaaccctacagattatcgagcaacccaccaccccggagacccctccggaa
gagaccgtcgatgacaccagcgagcccagcgaacccatcaaagcagaccagatcaatggg
gtaatggtgctaagccttcttgacaagattataggtgcagtggaccagattcagctaacc
cagacccagttggaagagaggcagcaggagatggagaatgtggttggcagcatccaagga
gaacttgccaagctgagcaaatcccatgccaccaccagcaacacagccagcaagatgctc
gagaaggtgaggaaggtgagcgtcaacgtgaagacggtcaggcacaacctggagaaacag
gcggcacaaatcaaaaagctggagtccaacgagtctgagcttctgagacgcaggaacttc
aaagtcatgatctaccaggatgacgtaaaattgccttccaagctcagcatcagcaaaact
ttgaaggataccgaaaaacaagacgtagccgaagaaggccagcaaaatgagaagaaggat
gaggaagagggagaggagcacatcgagttatcatctgatgaggaggtggaagtagaagag
atcatcgaggagtcaagagctgagcgcatcaagaaaagtggaatgcggcgggtagatgac
atcaagaaagctttctccaaagaaaaaatgaaaaaaaccaaagtgaagaccaaagaaaac
ttggaaaagaccaggcaaaacctggaaaaaaccaagcacaatatcgagaagaggatgaac
aagctgggaactaagattgtaacaacagaaagaagggagaagatgaagacctcaaaggac
aagttaaaaaagtccttcacgcctgaccatgttgtttacgctcggtctaaaaccgccgtc
tacaaagtgccccccttcaccttctacgtgaagaagatccgagatggggaggtggaagtg
caggcaacagagatggtggaggtgggaccggatggtgaagaggaagaaggggaaggagct
gagctgctgagaggcgagagcccagacccccactccctgctgcaaatcacagaggacgct
gacgccgttgtgggtgaaagaagcgacagcgactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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