KEGG   Xenopus tropicalis (tropical clawed frog): 493564
Entry
493564            CDS       T01011                                 
Symbol
cdc5l
Name
(RefSeq) cell division cycle 5-like protein
  KO
K12860  pre-mRNA-splicing factor CDC5/CEF1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    493564 (cdc5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    493564 (cdc5l)
   03400 DNA repair and recombination proteins [BR:xtr03400]
    493564 (cdc5l)
Spliceosome [BR:xtr03041]
 Complex B
  Other components
   Prp19 complex
    493564 (cdc5l)
 Complex C
   Prp19-CDC5 complex
    493564 (cdc5l)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    493564 (cdc5l)
SSDB
Motif
Pfam: Myb_Cef Myb_DNA-binding Myb_DNA-bind_6 Rap1_C
Other DBs
NCBI-GeneID: 493564
NCBI-ProteinID: NP_001008202
Xenbase: XB-GENE-983551
UniProt: Q66JL3
Position
5:complement(148141971..148164912)
AA seq 804 aa
MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK
TEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEYLLDKAAQRDNEEESADDP
RKLKPGEIDPNPETKPARPDPVDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEAR
RLAALQKRRELRAAGIEIQKKRKKKRGVDYNAEIPFEKKPAPGFYNTSEENYDALNADFR
KLRQQDLDGDLRSEKEARDRKKDKQNIKRKKESDLPSAILQTTGGVSELTKKRSKLVLPS
PQISDAELEEVVKIGQASEIARQTAEESGITNSASSTLLSEYNVANNSVALRTPKTPAAQ
DRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSQS
SEGITPRGGMTPKPVIGATPGRTPLRDKLNINPEDGTVDYNDPSYIKQMERESREHLRLG
LLNLPAPKNDFEIVLPENAERELEERDQDDSFVEDAADIEARKQAIREAQRAKELKNRHN
AVQKDLPRPSEVNKTILRPVNVEPPLTDLQKSEEMIKKEMIVMLHYDTIHNPYADNVGGK
RGKAPGSAATNAESLAFLEQSPYDKFSKEELKLAEDLLQQEMEVVKQGMGHGDLSIDSYN
QVWEECYSQVLYLPGQGRYTRANLASKKDRIESLEKRLEINRGHMTAEAKRAAKMEKKLK
ILLGGYQSRAMGLIKQLNEIWDQYEQANLELGTFEELKTHEDIAIPRRIECLKEDVQRQE
ERERELQQRFAELMLEKESYESIL
NT seq 2415 nt   +upstreamnt  +downstreamnt
atgccgcgaattatgataaaaggcggggtgtggcggaacaccgaggatgaaatcctcaaa
gcggctgttatgaaatatgggaaaaaccagtggtctcgtattgcttccttgctgcacagg
aaatcggccaaacagtgcaaagcccgatggtatgaatggcttgacccaagcatcaaaaag
acagaatggtcccgagaagaagaggagaaactacttcatctggccaagctgatgccaact
cagtggaggacaatcgctcctatcataggaagaacagccgcccagtgccttgagcactat
gaatatttactagataaagctgcgcaacgtgacaatgaggaggagtccgcagacgatcct
cgcaagcttaagccaggagaaattgatccaaatcctgaaacaaagccagcaaggccagat
ccagtggacatggatgaagatgagcttgagatgctctcggaggctagagctcgtcttgcc
aacactcaaggcaaaaaagccaagaggaaagcacgagaaaagcagctggaagaagccaga
cgtcttgcagccctacagaagaggagagagcttcgagctgccggaatcgaaattcagaag
aagaggaaaaagaagcgcggcgtggactacaacgccgaaatcccatttgaaaagaagcct
gcccccgggttctataatacatctgaagaaaactatgatgccttgaatgccgacttcaga
aaactccgccagcaagacctggatggcgacctcagatcagaaaaggaagcaagagaccgg
aagaaagacaaacagaacattaaaaggaagaaggaatctgatttgccatcagccattctt
cagacaactgggggagtctcggaacttactaagaagagaagcaaattagttctgccttcc
cctcagatttcagatgctgaactggaagaagtggtaaagatcgggcaagcgagtgaaata
gctcgtcagacggcagaggagtcgggtataaccaattccgcttccagcacgttactgtcg
gaatacaatgtcgccaataatagtgtggccctcaggacgcccaagacaccagccgcgcag
gaccgcatactgcaggaagcgcagaatctgatggccctcaccaatgtggatacaccatta
aagggaggtctcaacactcctcttcacgaaagcgatttttcaggagttacacctcaaaga
caagtggtacagacgcccaacactgtgctgtccacaccattcagaacaccttcccagagc
tcggaaggaattacccctcggggtggcatgactcccaaaccagttataggggctacacct
ggaaggactccgctgcgggacaagctgaacattaatccagaggatgggacagtggattat
aatgacccctcttacataaaacaaatggaaagggaatctcgggagcacctgcggctcggc
ttgctcaacctcccagcgccaaaaaatgactttgagatcgtattgccggaaaatgcagag
cgggagctggaggaacgagatcaagacgattccttcgtagaagatgctgctgacatagag
gccagaaagcaggcgatcagagaagcgcaacgagcaaaggagctcaagaaccggcacaac
gcagtgcaaaaggatttgcctcgaccatcagaggtgaataaaacgatcctgaggcctgtc
aatgtggagccgccgcttacagatctgcagaaaagcgaagagatgatcaaaaaggaaatg
atagtgatgctccattacgacaccatccacaacccttatgccgataacgtcgggggaaag
agagggaaggcgcccggctcagcggctaccaatgcagaaagccttgccttcctcgaacaa
agcccctatgataagttttctaaggaggaactcaagcttgcggaggatctcctgcaacaa
gagatggaagtggtgaagcaaggtatgggccacggggacctctccatcgactcctacaat
caggtgtgggaggaatgctacagccaggtgttgtaccttcctgggcaagggcgttacaca
cgggccaacctggccagcaagaaggacaggattgaatcgcttgagaagaggctagagata
aatcgaggtcacatgacagcagaagccaaaagggcagccaagatggagaagaaactgaag
atcttgctcggtggctaccagtcccgggcgatggggcttatcaaacagctgaatgagatt
tgggatcagtacgaacaggcaaacctggaactgggaacgttcgaagaactcaaaacgcac
gaagacatcgccattcctaggaggatagagtgcctgaaagaggacgtccagcgccaggaa
gagcgagagagggagctgcagcagagatttgccgagctgatgctggagaaggaaagctac
gaatccatactgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (4)   
   Pfam (4)   
All databases (25)   

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