KEGG   Xenopus tropicalis (tropical clawed frog): 496557
Entry
496557            CDS       T01011                                 
Symbol
ptbp1
Name
(RefSeq) polypyrimidine tract-binding protein 1
  KO
K13218  polypyrimidine tract-binding protein 1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    496557 (ptbp1)
   03041 Spliceosome [BR:xtr03041]
    496557 (ptbp1)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Trans-acting binding proteins
     496557 (ptbp1)
Spliceosome [BR:xtr03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    496557 (ptbp1)
SSDB
Motif
Pfam: RRM_5 RRM_1 RRM_8 RRM_occluded Nup35_RRM
Other DBs
NCBI-GeneID: 496557
NCBI-ProteinID: NP_001011140
Xenbase: XB-GENE-5818206
UniProt: Q5XGH0
Position
1:complement(100870839..100889960)
AA seq 554 aa
MEGIVQDITVGTKRGSDELFSCVTNGPFIMSNATAGENLYGSNGNDSKKFKGDSRSVAVG
SRVIHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEAANTMINYYTNV
APVLRSQPIYIQYSNHKELKTDNSPNQARAQAALQAVNSVVSGTTALSASAAAVDAGMAM
SGQSPVLRIIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPVSAQHA
KLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDGQPSLDQTIAAFG
APGLISANPYASAGFPPAFAIPQGVHGTLAPLALPSAAAAAAAAAAGRLGIPGLGIPGNS
VLLVSNLNPERVTPQCLFILFGVYGDVHRVKILFNKKENALVQMADGNQAQLAMSHLNGQ
RLHGKPLRITVSKHQTVQLPREGQEDQGLTKDYSTSPLHRFKKPGSKNFQNIFPPSATLH
LSNIPPSVSEEDLKMLFSNNGYTVKGFKFFQKDRKMALIQMGSVEEAIESLIELHNHDMG
ENHHLRVSFSKSTI
NT seq 1665 nt   +upstreamnt  +downstreamnt
atggaaggcattgttcaagatataacagttggtacaaagcggggatctgacgaacttttc
tcttgtgttactaacggaccctttatcatgagcaacgctaccgcaggtgaaaacctttat
gggtctaatggaaatgatagcaaaaaattcaaaggggatagcagaagtgttgcagtcggt
tctagagtgatccatgtccgtaagcttccaggtgatgtgacagaggcagaagtaatctct
cttgggctgccgtttggaaaagttaccaatcttttgatgttgaaaggcaaaaaccaggcc
tttcttgaaatgaacactgaggaagctgctaacactatgattaactattacaccaatgtt
gccccagttcttcgaagccagcccatctacatccagtactccaaccacaaagagctgaag
actgacaactctcccaaccaggctagagctcaagcagcactgcaggcagtgaattctgta
gtgtctggcaccactgcactatctgcttctgctgctgcagtggatgctggcatggccatg
tcaggacagagccctgttcttaggattattgtagaaaatctgttctaccctgtcacactt
gatgttcttcagcagatcttctcaaaatttggaacggtgctgaaaatcatcactttcaca
aaaaacaatcagtttcaggcgcttctgcagtatggtgatccagtgagtgcccagcatgct
aaactgtctctagatggacaaaacatttacaatgcctgttgtacccttcgcattgacttc
tcaaaactaaccagccttaatgtaaagtacaataatgacaagagtcgggactacacgcgc
cctgacctgccctctggggatgggcaaccttctctggatcaaaccattgcagcctttgga
gctccagggctgatttctgccaatccttatgctagtgctggattccctccagcctttgca
attcctcaaggtgtccatggaactctagctcctctggctctaccatcagcagctgctgct
gcagcagcagccgcagcaggcagacttggcattcctggacttggcatccctggaaactct
gtcctgctagttagcaacttaaatccagagagagttacaccccaatgcctctttattctt
ttcggagtgtatggtgatgtgcatagagtgaagatactctttaacaagaaagagaatgca
cttgtacagatggcagatggcaaccaagctcaacttgcaatgagccatctaaatggtcag
cgactccatggaaagcctcttcgtataactgtatcaaagcatcagacagttcagctgcca
cgagaaggacaggaagaccagggcttgacaaaagactacagtacctctcctctgcaccgc
tttaagaaaccaggctctaaaaacttccagaatattttccctccttctgccacactgcac
ctctcaaacattccaccatcggtgtctgaagaagatctaaagatgctgttttcgaataat
ggatacacagtaaaaggattcaaatttttccagaaagaccggaaaatggctctcatccaa
atgggttctgttgaagaggccatagaatcattgattgaattgcacaaccatgatatggga
gagaaccatcacctacgagtgtccttttccaaatccacaatttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (23)   

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