KEGG   Xenopus tropicalis (tropical clawed frog): 496572
Entry
496572            CDS       T01011                                 
Symbol
vps4b
Name
(RefSeq) vacuolar protein sorting-associated protein 4B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03250  Viral life cycle - HIV-1
xtr04144  Endocytosis
xtr04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    496572 (vps4b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    496572 (vps4b)
  09143 Cell growth and death
   04217 Necroptosis
    496572 (vps4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xtr04131]
    496572 (vps4b)
   03400 DNA repair and recombination proteins [BR:xtr03400]
    496572 (vps4b)
Membrane trafficking [BR:xtr04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    496572 (vps4b)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    496572 (vps4b)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 AAA_16 AAA_22 AAA_14 AAA_5 RuvB_N IstB_IS21 AAA_25 DUF815 AAA_18 AAA_2 AAA_33 AAA_24 PhoH nSTAND3 AAA_17 RNA_helicase Mg_chelatase AAA_7 AAA_28 Parvo_NS1 NACHT bpMoxR ResIII DUF5906 KAP_NTPase Viral_helicase1 MCM
Other DBs
NCBI-GeneID: 496572
NCBI-ProteinID: NP_001011154
Xenbase: XB-GENE-1001856
UniProt: Q5U4Y4
Position
6:complement(85879379..85895436)
AA seq 443 aa
MAANGTNLQKAIDLASKASQEDKAGNYEEALRLYQHSVQYFLHVVKYDAQGEKAKASIRA
KCIEYLDRAEQLKAYLKKKEKAPAKPVKEGAPRSADDKGNESDEGDSEDPEKKKLQSQLQ
GAIVMEKPNVKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKS
YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAREHKPSIIFIDEIDSLCG
SRSENESEAARRIKTEFLVQMQGVGVDNEGILVLGATNIPWVLDSAIRRRFEKRIYIPLP
EEHARADMFKLHLGTTPHSLSEADYRELGKKTNGYSGADISIIVRDALMQPVRKVQSATH
FKKVQGKSPLDPNVTRDDLLTPCSPGDPNAIEMTWMDVPGDKLFEPVVCMSDMLKSLAHT
KPTVNEEDLAKLKKFTEDFGQEG
NT seq 1332 nt   +upstreamnt  +downstreamnt
atggctgccaacgggacaaatctacagaaagctattgaccttgccagcaaggcatctcag
gaagacaaagcagggaactatgaagaagctctccgattatatcaacattctgttcagtat
tttcttcatgtggtaaaatatgatgcacaaggagaaaaggctaaagcgagcataagagca
aagtgcatagaatacctggacagagcagaacagcttaaggcatacctaaagaaaaaagaa
aaagctcctgcaaagccagtcaaagaaggagcacctagatctgctgatgacaaaggaaat
gagagcgatgaaggagattcagaagaccctgaaaaaaagaaattacagagtcagcttcaa
ggtgccattgttatggagaaaccaaatgttaaatggaatgatgtagctggattagaagga
gcaaaggaagctctcaaggaggctgtaatcttaccaataaaatttcctcatctgttcaca
ggcaagagaactccttggagaggaattcttttgtttggacctccagggacaggaaagtcc
tatctagccaaggctgtagcaacagaggcaaataattctacattcttctcaatatcctca
tctgaccttgtttcaaaatggttaggagaaagtgaaaaattggtgaaaaacttatttcag
cttgccagggaacacaagccatcaattatcttcattgatgaaattgactccctttgtggg
tcaagaagtgagaatgaaagtgaagctgcacgacgtattaaaacagagtttctagtccag
atgcaaggcgttggagtggataatgaaggcattttggtcttgggtgccacaaatatacca
tgggtgctagactctgccatccgtagacggtttgagaaacgaatttacattcctctgcct
gaagagcatgcaagagcagatatgtttaaactccaccttggaacaacaccacacagcctt
tcagaagcagactacagagagcttgggaagaagactaatggatattctggggctgatatt
agcatcattgtgagagatgccctgatgcagcctgtcaggaaagttcaatcagccacacat
ttcaaaaaggtacaagggaaatctcctcttgatccaaatgttacacgggatgatctgctt
accccatgctcacctggagatccaaatgccattgaaatgacttggatggatgttccaggg
gacaagttattcgagccagttgtatgcatgtctgacatgctgaagtcactcgctcacaca
aaaccaactgttaatgaggaagaccttgcaaaattaaagaaattcacagaagactttgga
caggaaggttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (32)   
   Pfam (32)   
All databases (51)   

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