KEGG   Xenopus tropicalis (tropical clawed frog): 496583
Entry
496583            CDS       T01011                                 
Symbol
hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha
  KO
K08268  hypoxia-inducible factor 1 alpha
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04137  Mitophagy - animal
xtr04140  Autophagy - animal
xtr04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    496583 (hif1a)
   04137 Mitophagy - animal
    496583 (hif1a)
   04148 Efferocytosis
    496583 (hif1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:xtr03000]
    496583 (hif1a)
Transcription factors [BR:xtr03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   Factors with PAS domain
    496583 (hif1a)
SSDB
Motif
Pfam: PAS_3 PAS_11 HIF-1a_CTAD HIF-1 PAS PAS_9 PAS_4 HLH DUF2121
Other DBs
NCBI-GeneID: 496583
NCBI-ProteinID: XP_031746581
Xenbase: XB-GENE-946622
UniProt: F6VTE9
Position
8:complement(101957879..101987873)
AA seq 796 aa
MEGSVVASDKKRISSERRKEKSRDAARCRRSKESEVFYELSHELPLPHNVSSHLDKASIM
RLTISYLRIRRLLDAGDLDGETELDKQLNCFYLKALEGFVLVLTEEGDMIYLSENVNKCM
GLTQFELTGHSVFDFTHPCDHEELREMLTFRNGPAKKGKEQITERSFFLRMKCTLTSRGR
TVNIKSATWKVLHCTGHMRVYDANNHNHCGYKKPPMTCMVIICEPIPHPSNIEFPLDSKT
FLSRHSLDMKFSYCDERVTELVGYEPDELLGRSVYEYYHALDSDHLTKAHHNMFTKGQVT
TGQYRMLAKKGGYVWVETQATVIYNSKNSQPQCIVCVNYVLSEVVEKDLILSLGQTACVL
SPVESQEMKMPEIFTELNEDNNAECLFEKLKQEPESLTVLAPDAGDEIISLDFSSGDSDK
PYEDVPLYNDVMLHSTSKKLESTPVTPLPASEMPKPLRSNVDPALNREVVIKMESNPEQL
ELTFTIPQLSKPDSPSDISSSQSSTEPSTPPEYCFDVDSEIASEFKLDLVEKLFAIDTEA
KAPFSTQETDLDLEMLAPYIPMDDDFQLRTFDQLSSLECDSSNPQTLGSMATLFQQSLLP
SSSDFKPEDAINDLKTIIQSPVHSAPASPFDGNRSRTSSPVRPAKSAVDKTEVSRPGTPN
LPVQLKKRCTVLDEELNPKMVALHNVQRKRKMESDGPLYQAIGIGTLFQTNVDPGPNSSL
LWKRVKGSDSDRPSSAEQRTILLLSTDMASQLLGQSLDGTVLPQLTGYDCEVNAPVHGNR
NLLQGEELLRALDQAN
NT seq 2391 nt   +upstreamnt  +downstreamnt
atggagggatctgtagtagcgagcgacaagaaaagaattagctcagagcgccgtaaagag
aaatcacgtgatgctgccagatgtcggaggagtaaggagtcggaggtcttttatgagcta
tcacacgagttgcctttaccgcacaatgtcagctcgcatcttgacaaggcctctatcatg
aggctcaccattagttacctgcggataagaaggttgcttgacgcaggagatttggatggt
gagaccgagttggacaagcaactcaattgtttctatttgaaggcactggaagggtttgtc
ttggttcttactgaagagggggatatgatttatctatctgaaaatgtcaacaagtgcatg
ggcctcacacagtttgagcttactggacacagcgtgtttgatttcactcatccttgcgat
catgaagagctaagggagatgctaactttcagaaatgggcctgcaaaaaaaggaaaagaa
caaatcacagaaaggagtttctttcttcgtatgaagtgcaccttaaccagtcggggaaga
acagtgaatataaagtcagccacgtggaaggtacttcactgtacaggacacatgcgtgta
tatgatgcaaacaaccataaccattgtggctacaagaagcctcccatgacatgcatggtt
ataatctgtgaaccaattcctcatccatcaaatattgagttccccttggacagcaagacc
tttcttagtcgccacagccttgacatgaagttttcctattgtgatgaaagggtaactgaa
ttagtaggatatgaaccagatgaacttttggggcgttctgtctatgaatattatcatgcc
ttggactctgatcatttgaccaaagctcaccataatatgttcacaaagggacaggtgact
actggacagtacagaatgcttgcaaaaaaaggtggttatgtctgggtggaaacacaagcc
actgttatatacaattctaagaattctcaaccacagtgcattgtttgtgtaaactatgta
cttagtgaggtggtagagaaagatttaatcttgtccctgggccagacagcatgtgttttg
agtccagttgaatcccaagaaatgaagatgccagaaatcttcacagagttgaatgaagat
aacaatgcagaatgtttgtttgaaaaactaaagcaggaaccagaatctcttacagttctt
gcacctgatgctggggatgaaattatttcattggatttcagttctggtgattctgacaag
ccatatgaagatgttccactttacaatgatgtaatgcttcactctaccagtaagaaactg
gaaagcacaccagttactcctctccctgcctcagaaatgccaaagcctttgcgcagtaat
gtcgaccctgcacttaaccgggaagttgtgataaagatggaatcaaatccagaacaacta
gaactaacattcaccattccacaactatccaagccagacagcccttcagatatcagttcc
agtcagagctcaacagagcctagtacacctccagaatattgctttgatgttgacagcgaa
attgcaagcgagttcaagctggatttggtggaaaaactgtttgcaatagacacagaggca
aaagcaccattttctacccaggaaacagacttggacttggagatgttggcaccatatatt
cctatggatgatgacttccaattgcgaacctttgaccaactttcatctttggaatgtgat
tcatcaaatccacaaaccttaggaagcatggccactctatttcagcagtctcttttacca
tcctccagtgatttcaagcctgaggatgccataaatgatctgaaaaccattattcagtca
cctgtccatagtgctccagcatcaccatttgatggaaacagaagccgcacaagttcacca
gtaaggccagccaaatcagcagtagataaaactgaagtgtctcgtccaggaactccaaat
ttacctgttcagttaaagaaaaggtgtacagttttggatgaagaattgaatccaaagatg
gttgctttacacaatgttcagagaaaacgtaaaatggaaagcgatggccctctttaccag
gctattggaattggtaccctcttccaaacaaatgttgatcctgggccaaactcttctctc
ttatggaaacgtgtaaaaggatcagactcagacaggccaagtagtgcagagcaaagaaca
atcctcttactgtcaaccgatatggcaagtcagttacttgggcagtcgttggatggaact
gttcttcctcagcttactggctatgactgcgaagtaaatgcccctgttcatggcaacaga
aacttgctccaaggggaagaactactaagagctcttgatcaagctaattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (32)   

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