KEGG   Xenopus tropicalis (tropical clawed frog): 496727
Entry
496727            CDS       T01011                                 
Symbol
vim
Name
(RefSeq) vimentin
  KO
K07606  vimentin
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    496727 (vim)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    496727 (vim)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:xtr04812]
    496727 (vim)
   04147 Exosome [BR:xtr04147]
    496727 (vim)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     496727 (vim)
Cytoskeleton proteins [BR:xtr04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     496727 (vim)
Exosome [BR:xtr04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   496727 (vim)
  Exosomal proteins of other cancer cells
   496727 (vim)
SSDB
Motif
Pfam: Filament Filament_head DUF1664 DUF4515 TPR_MLP1_2 TACC_C Jnk-SapK_ap_N DUF4407
Other DBs
NCBI-GeneID: 496727
NCBI-ProteinID: NP_001128275
Xenbase: XB-GENE-493024
UniProt: B5DES2
Position
6:complement(28574225..28587922)
AA seq 461 aa
MATTKSSYRRIFGGNPRSSSSGNRYVTSSTRYSLGSAMRPGAGSSSSRVVYSTSASPAVF
KSSSVRLRSSLPPARLADTVDFTLADAVNLEYKANRTNEKAEMQELNDRFANFIDKVRFL
EQQNKILVAELEQLKGKGTSRIGDLYEEEMRELRRQLDQVTNAKDRVEVDRDNLADDLQR
LREKLQDEMIQKEEAEGNLQSFRQDVDNASLARIDLERKVESLQEEIVFLKKLHDEEIRE
LQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVAAKNLSDAEDWYKSKFADLSEAANR
NNDALRQAKQDANDYRRQIQTLTCEIDAMKGSNESYERQMREMEENFAGEAANYQDTIQR
LQEEIHNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITVPVHSFSSMSLR
ETNLDSHPVESHSKRTLLIKTVETRDGQVINESSQHHDDLE
NT seq 1386 nt   +upstreamnt  +downstreamnt
atggcaacaaccaagtcatcttacagaaggattttcgggggaaaccctaggtcgagctcc
tctggaaatcgctatgtgacctccagcaccaggtattccctgggcagtgccatgcgccca
ggcgcaggcagcagcagcagcagagttgtctattccacatctgcctcccctgctgtattc
aagtcctcctcggtaaggctgagaagcagccttcccccagccaggctggcagacacagtg
gacttcaccctagcagatgctgtcaaccttgaatataaagccaacaggaccaacgaaaag
gctgaaatgcaagagctaaatgacagatttgccaacttcatcgacaaggtgcgattcctg
gagcagcagaacaagatccttgtggctgaactggaacagctgaaagggaagggaacctca
cggataggggacctctacgaggaggagatgagggagctccgtagacaattagatcaagtg
accaacgctaaagaccgggtagaagtagacagagacaacctggccgatgacctccagcga
ctgagagaaaagctacaagatgaaatgatccagaaggaagaagcagaaggcaacctgcag
tcatttagacaggatgtggacaatgcctctttggcacgtattgacttggagaggaaagtg
gagtctttacaagaggagattgttttcctgaagaaactccatgatgaggaaatccgagaa
cttcagcttcaaattcaggagtcacatatccaggttgacatggatgtgtccaaaccggac
ctcactgctgccctgcgtgatgtccgccagcagtacgagaatgtggctgctaaaaatctt
tcggatgccgaagactggtacaagtctaagtttgcggacctgtcggaagctgctaatcgc
aacaatgatgccctgcgtcaagctaagcaggatgccaatgactaccgcagacagatccag
actctcacctgcgagattgatgcaatgaaaggatctaatgagtcttacgaacgccaaatg
cgagaaatggaggagaattttgccggagaagctgctaattatcaggacactattcagcgc
ctgcaagaggagatccacaacatgaaggaagagatggctcggcacttgcgagagtaccag
gatctgctcaatgttaagatggcccttgatatagagattgctacttacaggaaactcctg
gagggagaagagagcagaattactgttcccgtacattccttttcttcaatgagccttaga
gaaaccaaccttgattcgcacccagtggaaagccattccaaacgcactctgctcatcaag
actgtggagacaagagatggacaggttattaatgaaagctctcagcaccatgatgacctg
gaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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