KEGG   Xenopus tropicalis (tropical clawed frog): 549211
Entry
549211            CDS       T01011                                 
Symbol
brcc3
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
  KO
K11864  BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03440  Homologous recombination
xtr04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    549211 (brcc3)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    549211 (brcc3)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:xtr01002]
    549211 (brcc3)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xtr04121]
    549211 (brcc3)
   03036 Chromosome and associated proteins [BR:xtr03036]
    549211 (brcc3)
   03400 DNA repair and recombination proteins [BR:xtr03400]
    549211 (brcc3)
Peptidases and inhibitors [BR:xtr01002]
 Metallo peptidases
  Family M67
   549211 (brcc3)
Ubiquitin system [BR:xtr04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   BRCC complex
    549211 (brcc3)
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   JAMM
    549211 (brcc3)
   BRISC complex
    549211 (brcc3)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    BRISC complex
     549211 (brcc3)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-A complex
     549211 (brcc3)
SSDB
Motif
Pfam: BRCC36_C JAB Prok-JAB UPF0172
Other DBs
NCBI-GeneID: 549211
NCBI-ProteinID: NP_001016457
Xenbase: XB-GENE-5812885
UniProt: Q4VA72
Position
8:38940348..38947846
AA seq 261 aa
MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGEVDTQKVVHIHSVIILRRSDKRKDRV
EISPEQLSAATTEADRLAEITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDVGFV
GLIFSCFIEDKNTKTGRILYTCFQSVQAQKSSEYERIEVPLHVVPHNTIRKVCLESAVEL
PRILCQEEQDAYRRIHSLGHLDSITKIHNGSVFTKNLCGQMSAISGPLLQWLEDRLEQNQ
QRAQELQSEKEQLLQELKALG
NT seq 786 nt   +upstreamnt  +downstreamnt
atggcagtacaagcagttcatattcagggggatgcctttttggtctgtgtcacccattcg
ctgagtacggaaagagaagaggttatggggttgtgcataggagaggtggacactcagaaa
gttgtgcacattcactcagttattatcctgcggcgttctgataaaaggaaggatcgagta
gagatttcacctgagcaactttctgcagcaactacagaggctgatagactggctgagatc
actggacgtcctatgagagtggttgggtggtatcactcccaccctcacatcactgtatgg
ccctcccatgtggatgtgcgcactcaggctatgtatcaaatgatggatgttggatttgtt
ggtctaattttctcatgcttcattgaggacaagaacaccaagactggccgtatcctgtac
acctgtttccagtcagttcaagcacagaagagttcagaatatgaacggattgaggtgcct
ttacatgtggtcccacacaatacaattaggaaagtttgccttgagtcagctgtggaactc
cctagaatcctttgtcaggaggagcaagatgcctatcgcaggatacatagtcttggtcac
ttggattctatcacgaagattcacaatggctctgttttcaccaagaacctatgtgggcag
atgtcggcaattagtgggccactgctccagtggctggaggaccgtctagaacagaaccaa
cagcgggctcaggagctgcagagtgagaaggagcagcttctgcaggagctgaaggctctt
ggctga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (25)   

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