KEGG   Xenopus tropicalis (tropical clawed frog): 549542
Entry
549542            CDS       T01011                                 
Symbol
rbm39
Name
(RefSeq) RNA-binding protein 39
  KO
K13091  RNA-binding protein 23/39
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    549542 (rbm39)
Spliceosome [BR:xtr03041]
 Common components
  Common spliceosomal components
   General mRNP proteins
    549542 (rbm39)
SSDB
Motif
Pfam: RRM_1 RBM39linker RRM_occluded PRP38_assoc RRM_7 RRM_5 FMP27-BLTP2_C CDC45
Other DBs
NCBI-GeneID: 549542
NCBI-ProteinID: NP_001016788
Xenbase: XB-GENE-492226
UniProt: Q566M5
Position
10:complement(42831503..42847435)
AA seq 542 aa
MADDIDIEAMLEAPYQKDENKLSSANGHEERSKKRKKSKSRSRSREKKRSRSKERKRSKD
RERKRSKSREKKRSRSRERRKSRSRSRERRFRGRYRSPYSGPKFGGGSMRGKMGGIPHGV
KLRRRSKSKSPQKREKSPVRGPIDNLSPEERDARTVFCMQLAARIRPRDLEEFFSTVGKV
RDVRMISDRNSRRSKGIAYVEFVDQSSVPLAIGLTGQKVLGVPIIVQASQAEKNRAAAMA
NNLQKGTAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFS
DSECAKKALEQLNGFELAGRPMKVGHVTERTDASNASSFLDSDELERTGIDLGTTGRLQL
MARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRISQQSEALAAAAASAATISLAAA
SSTLPIPATTQPIATQCFQLSNMFNPQTEDELGWDSEIKEDVIEECNKHGGVVHIYVDKN
SPQGNVYVKCPTIASAIAAVNALHGRWFAGKMITAAYVPLPTYHSLFPDSMTSTQLLFPS
RR
NT seq 1629 nt   +upstreamnt  +downstreamnt
atggctgatgacattgacatagaagcgatgctggaagctccttaccaaaaggatgagaac
aagttgagcagtgccaacggacatgaagaacgcagcaagaagagaaaaaaaagtaaaagt
aggagccgcagtcgtgagaagaaacgcagcaggagtaaggaacgtaaacgcagcaaagat
cgggaaagaaagagaagtaaaagccgtgaaaagaaacgcagccgaagcagagaacggcga
aaaagccgttctagaagcagagaacgcaggttcagaggtcgctacagaagcccttattct
ggaccaaagtttggtggtggctctatgcgtggcaagatgggaggaatacctcatggtgtg
aaattaagaaggaggtcaaagagcaaaagtcctcaaaagagagagaaaagccctgtaagg
ggtcctatagataatctgtctcctgaggaaagagatgcacgcactgtgttctgtatgcag
ctggctgctaggatccgtcccagagatttggaagaattcttctcgacagtaggcaaagtc
cgtgatgtgcgaatgatttcagacagaaattctaggcgctccaaaggcattgcttatgtg
gaatttgtggatcagagctctgtgcctcttgcaattggacttacaggccagaaagtgttg
ggagtcccaataattgtccaggcttcacaggcagaaaaaaacagagcagccgcaatggcc
aataatctccagaaaggcactgctgggcctatgcgtctgtacgtaggatcattacacttt
aacataaccgaagacatgctacgcggcatatttgagccatttggcaggattgaaagtatc
caactcatgatggacagtgagactggtcgctccaaaggatatggattcattaccttttca
gattctgaatgtgccaaaaaagctttggagcagttgaatggctttgaactggctgggcgg
ccaatgaaagttgggcatgtcacggagcgaaccgatgcatccaatgcaagctcatttctt
gacagcgatgagctggaaaggacaggaattgaccttggaactactggtcgccttcagcta
atggctaggcttgcagagggcaccggcttgcagatccctccggcagcacagcaagcgcta
cagatgagtggctctttagcttttggcgcagttgcagatctccaaactagaatttcccag
cagagtgaagcactggctgcggctgctgcatctgcggctaccatttctctggcggcggca
tcatctactctacctattcctgcgactactcagccaattgctacgcagtgcttccagctt
tccaacatgtttaacccccaaacagaggatgagctgggttgggactcggaaattaaagag
gatgtcatcgaagaatgcaataaacatggcggagtagttcatatttacgtagacaaaaat
tcacctcagggcaatgtctatgtcaaatgtccaaccatcgcatctgctattgctgctgtt
aatgctctgcatgggaggtggtttgctggtaagatgatcaccgctgcttatgtacctctc
ccaacgtaccacagcctcttccctgattccatgacctcaactcagcttctgtttccatct
cgccgatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (22)   
   UniProt (1)   
   RefSeq(pep) (21)   
DNA sequence (25)   
   RefSeq(nuc) (21)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (8)   
All databases (63)   

Download RDF
DBGET integrated database retrieval system