KEGG   Xenopus tropicalis (tropical clawed frog): 549847
Entry
549847            CDS       T01011                                 
Symbol
snrpd3
Name
(RefSeq) small nuclear ribonucleoprotein Sm D3
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    549847 (snrpd3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    549847 (snrpd3)
   03041 Spliceosome [BR:xtr03041]
    549847 (snrpd3)
   03032 DNA replication proteins [BR:xtr03032]
    549847 (snrpd3)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     549847 (snrpd3)
Spliceosome [BR:xtr03041]
 Complex A
  U1 snRNP components
   Sm proteins
    549847 (snrpd3)
  U2 snRNP components
    549847 (snrpd3)
 Complex B
  U1 snRNP components
    549847 (snrpd3)
  U4/U6.U5 tri-snRNP components
    549847 (snrpd3)
 Complex C
  U2 snRNP components
    549847 (snrpd3)
DNA replication proteins [BR:xtr03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     549847 (snrpd3)
SSDB
Motif
Pfam: LSM Kringle
Other DBs
NCBI-GeneID: 549847
NCBI-ProteinID: NP_001017093
Xenbase: XB-GENE-1014502
UniProt: Q28GL5
Position
1:152605888..152611966
AA seq 126 aa
MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ
VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGN
IFQKRR
NT seq 381 nt   +upstreamnt  +downstreamnt
atgtctatcggtgtaccaattaaagtccttcatgaggcagaaggccacattgtgacatgt
gaaactaacaccggagaggtatacagggggaaattgattgaagcagaggataacatgaac
tgccaaatgtcaaacatcactgtaacgtacagggatggcagagtggcacaactagaacag
gtctacatcagaggcagcaaaattcgttttctcatcctcccagacatgttgaaaaatgct
cccatgttaaagagtatgaagaataaaaaccagggttctggtgccggcagaggaaaagca
gctattctcaaggcccaagtggcagcgagaggaagaggccgcgggatgggacgtgggaat
atcttccaaaaacggcgataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (26)   

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