KEGG   Xenopus tropicalis (tropical clawed frog): 549967
Entry
549967            CDS       T01011                                 
Symbol
ddx23
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
  KO
K12858  ATP-dependent RNA helicase DDX23/PRP28 [EC:5.6.2.7]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    549967 (ddx23)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    549967 (ddx23)
Enzymes [BR:xtr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     549967 (ddx23)
Spliceosome [BR:xtr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    549967 (ddx23)
 Complex C
   U5 SnRNP specific factors
    549967 (ddx23)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19
Other DBs
NCBI-GeneID: 549967
NCBI-ProteinID: NP_001017213
Xenbase: XB-GENE-986212
UniProt: A0A6I8SPD1 Q28IF2
Position
2:complement(135984009..136003890)
AA seq 806 aa
MAGELTDKRDRDGSPSKERKRSRSRSAERDRDRKSSPSKDRKRHRSRERRRSRSRSRSRS
KSNERDRRQKDRKKDREREKDTHRRDKERKRSRSVSPNRGKETKVKKEVKKEVEEEEQTD
KKSKVNPLSLEELLAKKKKEEEAESKPKFLSKAEREAEALKRRQMQVEERQSLLEEERKK
RKHFQETGRRMLEDPQERERRERRERIERENNGNEDDEGRIKVREEKDKTKELQAIKERY
LGGLKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKR
EQSRFYGDLMEKRRTLEEKEQEEVRLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFR
EDYSITTKGGKIPNPIRSWVDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGV
AETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKP
LGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRM
IDMGFEPDVQKILEHMPVTNQKPDTDEAEDPEKMTANFESGKHKYRQTVMFTATMPPAVE
RLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSEAEKRKKLLAILEKGFDPPIIIFVNQK
KGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVS
MVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSSVFYDLKQAILESPVSSCPPE
LANHPDAQHKPGTILTKKRREETIFA
NT seq 2421 nt   +upstreamnt  +downstreamnt
atggcaggagaactgacagataaaagagaccgtgatgggtctccatccaaggagcgtaag
cgctcccgttccagatcagctgagagggaccgcgataggaaatcatcaccctccaaagac
aggaaaagacatcgctctcgggaaaggagaagatctcgaagtcgttctcgttcacgctcc
aaatcaaatgaaagggaccgaagacagaaagatcgaaagaaggatcgggaaagagagaaa
gatacccacagacgagacaaagaaagaaagcgttctagaagtgtgtcccccaacagagga
aaagaaaccaaagtaaagaaggaagtaaaaaaagaagtggaggaagaagagcagacagac
aaaaagtcaaaggtgaatcctttgtcactagaggaactgctagcgaagaagaaaaaagag
gaggaggcagagtccaagccaaaattcctttccaaagcagagagggaggccgaggcctta
aagcgcagacagatgcaggtggaagagcgacaaagcttactcgaagaggagcggaagaaa
aggaagcatttccaggaaactgggaggaggatgcttgaggatccacaggagagagaacga
cgagaacgcagagaaaggatagagagagagaacaatggtaatgaggatgatgaaggtaga
ataaaagttcgcgaggaaaaagataaaaccaaggaactgcaagcgatcaaggagcgatat
ttgggcggtctaaaaaagcgaaggcgcactcgccatctaaatgacagaaaatttgtgttt
gaatgggatgcctcagaagatacttctattgattataatccactgtacaaagaacgacac
caggtccagcttcttggacgtggcttcattgctggcatagatcttaagcaacaaaagcgt
gaacagtcccggttctatggagacctcatggaaaaaagacggacactggaggaaaaagaa
caggaagaagtaaggctccgcaagctaagaaaaaaagaagccaagcagcgctgggatgat
aggcactggtctcagaagaagttggatgaaatgacggacagggactggcgtatattcaga
gaagattacagcatcaccacaaaaggtggcaagatccccaatccaatccgttcttgggtt
gactcctctcttcctccacatatactggaagttatcgacaaatgtggatataaggagcca
actcctatccagcgtcaagccatccccattggtttgcagaaccgggatattatcggtgtt
gctgaaactggcagtggtaaaactgctgccttcctgattcctttgttggtctggatcaca
actctccccaaaatagacaggattgaagaatctgaccaaggaccttatgcaattattctg
gctccaacaagagagttggctcaacagattgaggaggaaactatcaagtttggaaaacca
cttggtatcaggacagttgctgttattggtggtatctctcgagaggaccagggattccgc
ctgagaatgggttgtgagattgtgattgccactcctgggcgtctgatagatgtactagaa
aatcgctacttggttctaagtcgctgtacttatgtggtacttgatgaggctgaccgtatg
attgacatgggtttcgagcccgatgtccaaaagattctagaacacatgccagtgaccaac
cagaagcccgatactgatgaggccgaggatccagagaaaatgactgccaactttgaatct
ggaaaacacaaataccgacagactgtcatgtttacagccacaatgcctccggctgtagag
cgtttggcaagaagctatctgcgtaggccagcagtagtgtatattggctctgctggcaaa
cctcatgagagagtagagcagaaggtgttcctcatgtcagaagcagagaagaggaagaaa
ttgcttgccatcctggagaaaggatttgatccaccaatcattatttttgtcaaccagaag
aagggatgcgatgtactggcaaagtctctggagaaaatggggtacaatgcttgtactttg
catggtggcaaaggccaagaacagagagagtttgcgttgtctaaccttaaggctggagcc
aaggatatactggttgcaactgacgttgctgggcgtggtattgatattcaggatgtgtct
atggttgtgaattatgacatggccaagaatattgaagattatatccatcgtataggaaga
accggaagagctggtaagagtggtgttgccatcactttcttgaccaaagaagactcctct
gtgttctatgacctcaagcaggccattcttgaaagtccagtgtcatcctgtccacctgaa
ctggccaaccaccctgatgcccagcataagcccggcacaattctcactaagaagaggaga
gaggagactatctttgcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system