KEGG   Xenopus tropicalis (tropical clawed frog): 550072
Entry
550072            CDS       T01011                                 
Symbol
traip
Name
(RefSeq) E3 ubiquitin-protein ligase TRAIP
  KO
K11985  TRAF-interacting protein [EC:2.3.2.27]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xtr04121]
    550072 (traip)
Enzymes [BR:xtr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     550072 (traip)
Ubiquitin system [BR:xtr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    550072 (traip)
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4_2 zf-rbx1 zf-RING_5 zf-RING_UBOX zf-C3HC4 zf-RING_11 zf-C3HC4_3 zf-ANAPC11 zf-C3HC4_4 Zn-ribbon_8 MAD RINGv zf-RING_16 Crescentin zf-RING-like zf-Nse WEMBL FANCL_C GAS
Other DBs
NCBI-GeneID: 550072
NCBI-ProteinID: NP_001017318
Xenbase: XB-GENE-922321
UniProt: F7EDI4
Position
4:complement(126169891..126182060)
AA seq 463 aa
MPIRAYCTICSDFFDNSRDVAAVTCGHTFHQECLLQWFHSAPHRTCPQCRIQVSSRQIIN
KLFFDIGGEEETVLDPESLKNEVDRIKVSLLAKEKEKRECQGLVDSLREMLDVRNVTIQS
LQKELGDMEMLCSTLKKQMKFLDNQKSETKAAKDEARKLRNKLKTMESIEVLLQAQRPEV
EEMIRNMGSGQAAVEQLAIYCVSLKKEYENLKEVRKSSAEMTEKLRKEIFASNNKAQKAE
LQLTKVREELSASQKELHNADKEIMSLKKKVEFLQKTLTTPTASNEAISRLIFESPAPIG
LERPKLRPPIMGNDINLDVTFDIDTPEHSTQKAVVAPFKKMKFDSKESPMSSPTKTPLQE
SKGLMSWAGGKAGADEDDLTLPSFIKNSLIHKKPVGSLLSLRQNTGAVRTGFDGLGGRTK
FIQPSNLTEIRPLHQKMKRKKVSRPTACTSSLANQPRLEDFLK
NT seq 1392 nt   +upstreamnt  +downstreamnt
atgcccatacgtgcctactgtacaatttgctcggatttctttgataattcgcgggatgtg
gccgcggttacgtgtgggcacacgttccatcaggagtgcttgctccagtggtttcactcg
gctccacatcgtacctgtccacagtgtcgaatccaggttagctccaggcaaattatcaac
aagctcttctttgatattggtggagaggaggagactgtacttgatccagaatcattgaag
aatgaagtcgacagaataaaagtcagtctgcttgcaaaagagaaagagaagagagaatgt
cagggtcttgtggactctttacgggagatgctagatgtcagaaatgtcactatacaatcc
ctgcagaaggagttgggggatatggaaatgctctgttcaacactaaagaaacaaatgaag
ttcttggataatcagaagtcagagaccaaagctgccaaggatgaagctcggaagctaaga
aacaagctgaagaccatggaaagcattgaagtgttgttacaggcccagagaccagaagtg
gaggagatgatcagaaatatgggatcaggacaggctgcggtggaacaactcgctatatac
tgtgtatcattaaaaaaagaatatgagaatttaaaagaagtccgaaaatcttctgctgag
atgactgagaagctaagaaaggaaatatttgcgtcaaacaacaaggcacaaaaggctgag
ctgcagttaactaaagtacgggaagagctcagtgccagtcaaaaggagcttcacaatgca
gataaggaaatcatgagcttaaagaaaaaggttgagtttctgcagaagacacttaccaca
ccaacagcatccaatgaagcaattagtcgtttgatctttgagagtcctgcacccatcggg
ttggaaagaccaaagctccggccaccaataatggggaatgatattaaccttgatgtcact
tttgacattgatacacccgaacacagcacacaaaaagctgttgtcgctccgttcaagaaa
atgaagtttgatagtaaagagagtcccatgtccagcccaacgaaaacccctctgcaggag
agcaaaggtttaatgagctgggcaggaggtaaagccggagctgatgaagatgaccttacc
ttgccatcgttcattaagaactcgctgattcacaagaaacctgtagggagtctacttagc
cttcggcaaaacacaggagccgtacggactggatttgacggtttgggaggaagaactaag
ttcatccagcctagtaacctaacagaaatccgacccttgcatcaaaagatgaagaggaaa
aaagtttccaggcccacagcatgtacttcctcacttgccaaccagcccaggctagaagac
ttcttgaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (20)   
   Pfam (20)   
All databases (37)   

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