KEGG   Xenopus tropicalis (tropical clawed frog): 594937
Entry
594937            CDS       T01011                                 
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
  KO
K12852  116 kDa U5 small nuclear ribonucleoprotein component
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    594937 (eftud2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    594937 (eftud2)
Spliceosome [BR:xtr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    594937 (eftud2)
 Complex C
   U5 SnRNP specific factors
    594937 (eftud2)
SSDB
Motif
Pfam: GTP_EFTU EFTUD2 EFG_C EFG_IV GTP_EFTU_D2 EFG_III
Other DBs
NCBI-GeneID: 594937
NCBI-ProteinID: NP_001025537
Xenbase: XB-GENE-972643
UniProt: Q5BL79
Position
10:17863738..17887964
AA seq 974 aa
MDADLYDEFGNYIGPELDSDDDNDDDDMGRDDRDVDVAEDEDDDEYTGDPDDDRGGMEVV
LHEDKKYYPTAEEIYGPEVETIVQEEDTQPLTEPIIKPVKAKKFSMMEQGLPATVYEMDF
LADLMDNPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRHDQDLCYTDILFTEQERG
VGMKSTPVTIVVPDTKEKSYLFNIMDTPGHVNFSDEVTAGFRISDGVVLFIDAAEGVMLN
TERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLLSMYSTDENL
ILSPLLGNVCFASSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTK
KAPTSSSQRSFVEFVLEPLYKILAQVVGDVDTTLPQTLEELGIHLTKEELKLNIRPLLRL
VCNRFFGEFTGFVDMCVQHIPSPKAGARAKIEHTYAGGIDCELGEAMSECDPDGPLMCHT
TKMYSTDDGVQFHAFGRLLSGTIHAGQPVKVLGENYTLEDEEDSQVCTVGRLWVSVARYH
IEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPS
ELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADP
VVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQISWNRKKLGEFF
QTKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLSSVKDSIVQGFQWGTREGP
LCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQA
PADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSL
SVFHHWQIVPGDPLDKSIIIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPML
LELAKQDVVLNYPM
NT seq 2925 nt   +upstreamnt  +downstreamnt
atggacgctgacttgtacgatgaatttggtaactacattgggcctgaattggattcagat
gatgataatgatgacgatgacatggggagagatgacagggatgtggatgtggcagaagat
gaggatgatgatgagtatacgggggatcctgatgatgatcgtggaggaatggaagttgtg
ctgcatgaagacaaaaaatattatcccaccgcagaggaaatttatggcccagaggtggaa
accattgtgcaggaggaagacacccagccgcttactgaaccaattattaaaccagtgaag
gctaaaaagttttctatgatggagcagggactgccagcaactgtttatgagatggacttc
ctcgccgatctaatggacaatcctgaactgatccggaatgtgactctctgtggccacctg
caccatggaaagacctgttttgtggactgtttgattgagcaaacgcacccagagatccgc
aagcgccatgaccaagatctttgctacacagatattctttttaccgagcaggagagagga
gttggtatgaagagtacacctgtgacaattgtggttccagacaccaaggagaagtcttac
ctgttcaatattatggacacaccaggtcatgttaacttttcagatgaagttacagctgga
tttcggatctctgatggagtggtgttgtttattgatgctgctgagggggttatgctgaac
acagagagactgattaaacatgctgttcaggaacgtcttgccgtcactgtctgcatcaac
aagatagacaggctgattcttgagcttaagctgcctccgactgacgcctattacaaactg
cggcacattgtggatgaagtgaatggactgcttagcatgtattccacagacgagaaccta
attctctctcctctcctgggaaacgtctgttttgctagctcacagtacagcatctgcttt
acattgggatcatttgccaagatttatgctgacacatacggggacatcaattaccaggag
tttgcaaagcgattgtggggagacatctacttcaatccgaaaacccgcaagttcaccaag
aaagcccctacaagcagctcacaacgcagttttgtggagttcgtactggaacctctctac
aagattctggctcaggtggtgggggatgtagacaccactctgccgcagactctagaggag
ctgggaattcatctgaccaaagaggagctgaaactgaacatccgtcccctcctgagactt
gtctgtaaccgcttcttcggggaatttaccggttttgtggatatgtgcgtccagcacatc
ccttcacccaaagcgggggcaagagccaaaattgaacacacctacgcagggggcattgat
tgtgaactaggggaggccatgagtgaatgtgacccagatggccctcttatgtgtcacacc
accaagatgtatagcacagatgatggggtgcagttccatgcatttgggcggttactgagt
ggaacaatccatgctgggcaaccagtcaaagttttgggagagaactatacactggaggat
gaagaggactctcaagtttgcactgtagggaggctgtgggtgtctgtagctaggtatcac
attgaagtgaacagagttccagctggaaactgggtgttgattgagggtgtggaccagcca
attgtgaagacggcaaccatcacagagccacggggcaatgaggaggctcagatttttcga
ccgctaaagttcaacaccacgtccgttattaaaattgctgtggaaccagtcaacccctca
gaattgcccaagatgttggatgggttgaggaaggtcaacaagagctacccttcccttact
accaaggtggaggagtccggggagcatgtgatcctcggtaccggagagctgtatctggac
tgtgtcatgcatgacctccgcaagatgtattcagagattgacattaaggtggcagatccc
gtggttaccttctgcgagactgtagtggaaacctcatcactgaaatgttttgctgagaca
ccaaacaagaaaaataagatcacaatgattgcggagccgctggagaaaggattggctgag
gacatagaaaatgaagtggtgcagatttcctggaacaggaagaagctgggagagtttttt
cagaccaaatatgactgggatttgcttgctgcccgttctatttgggcttttggaccagac
acaactggaccaaatattttggttgatgacacgctcccctccgaggtggataaggcgttg
ctgagttcagtcaaagacagcattgtacagggattccagtggggaacaagagagggtccg
ttgtgtgatgagttgatccgcaatgtcaaatttaagatcttggatgctgttatcgcacag
gagcccctacaccgtggtgggggacagatcatccccacagcccgaagagtggtttactcc
gccttcctaatggcaactcctcgtctaatggagccctattattttgtggaagtacaagcc
cctgcagactgtgtctctgctgtttatactgttttggcccgaagaagagggcatgtgact
caggacgccccaattcctgggtcgcctctttacacaatcaaagccttcatcccagcaata
gattcatttgggtttgagactgacctgcgaacacacacccagggacaagccttctccttg
tctgtcttccatcactggcagattgttcctggagaccctctggataaaagcatcattata
cggcccttggaaccacaaccagcaccacaccttgccagggagttcatgataaagacaagg
cgtaggaagggcctaagcgaggatgtgagtatcagcaaatttttcgacgatcctatgttg
ctggaactggcgaaacaggatgtggtgctaaattatcctatgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (12)   
   RefSeq(nuc) (2)   
   GenBank (5)   
   EMBL (5)   
Protein domain (6)   
   Pfam (6)   
All databases (30)   

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