KEGG   Xenopus tropicalis (tropical clawed frog): 595030
Entry
595030            CDS       T01011                                 
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
  KO
K12855  pre-mRNA-processing factor 6
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    595030 (prpf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    595030 (prpf6)
Spliceosome [BR:xtr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    595030 (prpf6)
 Complex C
   U5 SnRNP specific factors
    595030 (prpf6)
SSDB
Motif
Pfam: PRP1_N TPR_14 TPR_19 TPR_16 TPR_2 TPR_17 Suf FAT TPR_21
Other DBs
NCBI-GeneID: 595030
NCBI-ProteinID: NP_001025642
Xenbase: XB-GENE-997713
UniProt: Q5BJ59
Position
10:1349023..1361403
AA seq 972 aa
MAASVSTGSGAGPSGSGNPTGTSGLTAAITGTMNKKKKPFLGMPAPLGYVPGLGRGATGF
TTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQADDDDEDLNDTNYDEFNGYAGSLF
SSGPYEKDDEEADAIYAALDKRMDERRKERREQREKEEIEKYRMERPKIQQQFSDLKRKL
AEVTEEEWLSIPEVGDARNKRQRNPRHEKLTPVPDSFFAKHLQTGDSHSSVDPRQTQFGG
LNTPFPGGLNTPYPGGMTPGLMTPGTGDLDMRKIGQARNTLMDMRLSQVSDSVSGQTVVD
PKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVAR
NLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDLRAK
KRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTNVELWLALARLETYENA
RKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQD
AEECDKAGSVATCQAIIKDVIGIGIEEEDRKHTWMEDADSCVAHSALECARAIYAHSLQV
FPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARS
ILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLG
NIEAAQDLCEEALRHYEDFPKLWMMKGQIEEQGEQIEKARDAYNQGLKKCLHSTPLWLLL
SRLEEKVGQLTRARAILEKSRLKNPKTPELWLESVRLEFRAGLKNIANTLMAKALQECPN
SGILWAEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVK
IDSDLGDAWATFYKFELQHGTEEQQEEIRKRCENAEPRHGELWCAVSKDIKNWQQKIGEI
LVLVAAQIKNAF
NT seq 2919 nt   +upstreamnt  +downstreamnt
atggcggcgtccgtatctacagggagcggagcggggccctcgggctcagggaacccaacc
gggacttcgggactcaccgctgccattaccggcaccatgaacaagaagaagaaacccttc
ctcggcatgcccgcaccgctgggatatgtaccgggcctgggccggggtgccactggcttt
actacccgttctgatatcggtcctgcccgtgatgccaatgacccggtggatgaccgccat
gcccctcccgggaagagaactgtgggggaccagatgaagaagaaccaagcagatgatgat
gatgaagacttgaatgatacaaattacgatgagttcaacggctacgccgggagcttgttc
tctagcggcccctacgagaaggacgacgaggaagcggatgccatctacgcggccctggat
aagcgtatggatgagaggcggaaggagagaagggagcagagggaaaaggaggagattgag
aaatatcgtatggagagacccaagatccagcagcagttctctgacctgaagaggaagctg
gcggaagtgacggaagaggagtggctgagcatccctgaggtgggagatgcgcgcaacaag
cgccagaggaacccgcggcatgaaaagctgacgcccgtccccgacagcttctttgcaaag
cacttacagactggggacagccactcgtcagtcgatccgcgccaaacgcaattcggaggg
ttgaacaccccgttcccagggggactgaatactccgtaccctggcgggatgaccccgggg
ctaatgactcccggtactggggatctggacatgaggaagattggacaggccagaaacaca
ctaatggacatgaggctgagccaggtgtccgactctgtaagtggccagactgtggttgac
cccaaaggttatctgactgacctgaactctatgatcccaacccacggcggggatatcaat
gatattaagaaagcccgtctgcttctgaagtcagtgagagaaacgaaccctcatcacccc
ccggcctggatcgcttctgcccgtctcgaggaggtgactggcaaattacaagtcgctcga
aacctcatcatgaaaggaacagagatgtgccccaagagtgaagatgtctggctggaggct
gctcggttacagcccggggacactgccaaggcggtggtagcacaagctgtgcggcacctc
ccacagtccgtgcgcatttatatccgagcagcagagctggagactgatcttcgagccaag
aaacgcgtcctgagaaaagctctggagcatgtccctaactctgtccgtctgtggaaagct
gcagtggagctggaggagccggaggatgctcgaatcatgttgagtcgtgctgtggagtgt
tgccccaccaatgtggagttgtggctggctttggccaggttggagacctatgaaaatgcc
cgtaaggttctgaacaaggctcgggagaacattcccacagacagacatatctggatcaca
gctgccaagctggaagaggccaacggcaacacacagatggtggagaagattatagacaga
gccatcacatctctgagagccaacggggtcgaaatcaaccgtgagcaatggatacaggat
gcagaggagtgtgacaaggctggcagcgtggcaacatgtcaggccatcatcaaggatgtc
attggcatcggaatagaagaggaggatcggaagcacacgtggatggaggatgctgacagt
tgcgtcgctcacagtgccttggagtgtgcccgggctatctatgcccactcccttcaggtc
ttccccagcaagaagagtgtgtggctgagggctgcgtattttgagaagaaccacggcacc
agggagtcgctggaggcgctcttgcagcgtgctgttgcccattgtcctaaagctgaagtg
ttgtggctgatgggagccaagtccaagtggctagcaggtgatgtgccggctgccagaagt
atccttgccttggcttttcaggccaatcccaacagcgaagagatttggttggctgccgtc
aaattggagtctgaaaacaatgaatatgagagagctcgccggctgctggccaaggctcgg
agcagcgcacctactgccagggtgttcatgaaatctgtaaaactggaatgggttttgggg
aacatcgaagcagctcaggatctctgcgaggaagcccttcgtcactatgaggattttccc
aaactctggatgatgaaggggcagattgaagagcagggggaacagattgaaaaggccaga
gatgcctataaccaagggctgaaaaagtgtctccattccacgcctttgtggttgctcctg
tctcgcctggaggagaaggttgggcagctgacacgagccagggccatcctggagaagtct
cgtctgaaaaacccaaagaccccggagctgtggctcgagtctgtgcgtctggagttccga
gctgggctaaagaacatcgccaataccctaatggctaaagctctgcaagaatgtcccaac
tcaggaattctgtgggcagaagcggtgttcctggaagccaggccccagcgcaagacaaag
agcgtcgatgcccttaagaagtgtgagcacgacccacatgtgctgctggcagttgctaaa
ctcttctggagcgaacgcaaaatcaccaaagcccgggaatggtttcaccggaccgtgaaa
attgactcagacctgggggatgcctgggcaaccttctataagtttgagctgcagcacggt
acagaggagcagcaagaggagatcaggaagcgatgcgagaatgcagaaccgcgccacggg
gagctttggtgtgcggtgtccaaagatataaagaactggcagcagaagataggggagatc
cttgtcttggtggcggctcaaatcaagaacgccttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (9)   
All databases (23)   

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