KEGG   Xenopus tropicalis (tropical clawed frog): 613110
Entry
613110            CDS       T01011                                 
Symbol
copb2
Name
(RefSeq) coatomer subunit beta'
  KO
K17302  coatomer subunit beta'
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xtr04131]
    613110 (copb2)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xtr04147]
    613110 (copb2)
Membrane trafficking [BR:xtr04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    613110 (copb2)
Exosome [BR:xtr04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   613110 (copb2)
SSDB
Motif
Pfam: Coatomer_WDAD WD40 NBCH_WD40 ANAPC4_WD40
Other DBs
NCBI-GeneID: 613110
NCBI-ProteinID: NP_001027518
Xenbase: XB-GENE-964668
UniProt: Q4VA86
Position
5:complement(128418964..128436604)
AA seq 920 aa
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD
MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVSGLRGSNNVALGYDEGSIIVKLG
REEPAMSMDANGKIIWAKHSEIQQANLKAMGDTEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSLVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIA
TEESFFILKYLSEKVATAQETHEGVSEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSTV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFSMADKVIPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFGLAQECLHSAQDYGGLLLLATSSGNATMVNKLAEGAE
KDGKNNVAFLSYFLLGKLDSCLELLISTGRLPEAAFLARTYLPSQVSRVVKLWKESLGKV
NQKAADSLADPTAYENLFPGLREAYAAEPFLKQNSGILLPAKEYRHVTPNEERNILSEAK
GFDPSESAFTAVEKESVEVPNQAVPIPFAVPSPSIPAPEMPAPKSSMDKALFDLEEDLDN
MELDDIDTTDINLDDELSDE
NT seq 2763 nt   +upstreamnt  +downstreamnt
atgcctctgcgacttgacatcaagagaaaacttactgctcgctctgaccgagtgaagagt
gtggacttgcacccaacggagccatggatgttggctagcttatacaatggcagcgtctgt
gtatggaatcatgaaacacagactttagtgaagacgtttgaagtctgtgatcttccagtc
agagcagcaaagtttgtggcccgaaaaaactgggttgtcacaggagctgatgacatgcag
atcagggtgttcaactacaacactctggaaagagttcatatgtttgaggcccactctgat
tatatacgatgcattgccgtacacccaacacagcctttcattcttacaagcagtgatgat
atgctgatcaaactgtgggactgggataagaagtggtcctgctcccaggtcttcgaaggt
catacacactacgtcatgcagattgttataaatcccaaggacaacaaccagtttgccagt
gcttccttggatcgcacaatcaaggtctggcagctgggctcctcttctcccaatttcact
ttggagggacatgagaaaggggtcaactgtattgattattacagtggaggtgacaagcct
taccttatttctggggctgatgacagactggtgaagatttgggattaccagaataaaact
tgtgttcagacacttgagggccacgcgcagaatgtttcttgtgtcagcttccaccctgaa
cttcccattatcatcacaggctcagaagatggtacggtgaggatctggcactctagcact
taccggctcgagagtacccttaactatggcatggaacgagtgtggtgtgtgtctggacta
cgaggttctaacaatgtggcacttggatacgatgaaggcagcatcattgttaagttgggg
cgtgaagaaccagcaatgtccatggatgccaatggtaaaattatctgggctaagcactcc
gagattcagcaggcaaacttgaaggccatgggggacacagagattaaggatggggaaagg
cttccacttgctgtgaaggacatgggcagttgtgaaatctacccccaaacaatccagcac
aaccctaatggaagatttgtagtggtgtgcggagatggagaatacattatttacactgct
atggcactgagaaacaagagctttggatcagcacaggaatttgcctgggctcacgactct
tctgaatatgctattcgagaaagcaacagcctggtgaagattttcaagaactttaaggag
aagaagagctttaaaccagactttggggcagaaggtatctacggcggattccttcttggt
gtgcggtctgttaacggtttggctttctatgactgggagaatacagagctcatccgcagg
attgagatccagcccaaacacattttctggtccgactctggagaacttgtgtgcattgct
acagaggaatccttcttcatcctcaaatatttatctgagaaagtagccacagcgcaggag
acccatgagggagtgtccgaggatggaatagaagatgcttttgaggttcttggagaaatt
caggagatcgttaaaactggtctgtgggttggagactgttttatatacacaagcacagtg
aacagactcaactactatgtgggaggagagattgttactattgcacacttagatagaacc
atgtacctgcttggttacattcccaaagataaccgcctctaccttggggacaaggagctc
aatatcgtcagttactcactgcttgtatcagtcttggaatatcagacagctgtcatgaga
agagacttcagcatggctgacaaagtaatcccaactatccccaaagagcagaggacccgg
gttgctcacttcctggaaaaacagggtttcaaacaacaggctttggctgtgtccacagat
cctgaacatcggtttgagctagcacttcagctgggagagcttaagattgcctatcagcta
gctgtggaagcagagtcagagcagaagtggaagcagctggcagagttggccatcagcaaa
tgtcagtttggattggctcaggagtgcctacacagtgcccaggactatggtgggctctta
ctcctcgccacctcttcagggaatgccaccatggtgaacaagctggctgaaggtgcagag
aaagatggaaaaaacaatgtagctttcctaagctatttcttactggggaaattggactcc
tgcttggagctgctcatttctacaggccgcttgcccgaggcagcatttctggcaagaacc
tacctgccaagtcaggtgtccagggtggtaaaattatggaaagagagcctaggcaaggtc
aatcagaaggcagcagactctttggcagaccccactgcatacgaaaatctctttcctggt
ctaagggaagcctatgcggcagaaccatttttgaagcagaactcgggcattctgcttcca
gctaaggaatatcgtcatgtgactccaaacgaagagagaaatatcttgtctgaagcaaag
ggatttgatccatcagaatccgccttcactgcagtagaaaaagagagcgtagaagtccca
aatcaagcggttcccatccctttcgcagtaccatcaccatcaataccagcaccagaaatg
cctgcccctaaaagcagcatggataaggcattatttgacctagaagaggatttagacaac
atggagctagatgatattgacaccacagacattaacttggatgatgagctttccgatgaa
taa

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Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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