KEGG   Xenopus tropicalis (tropical clawed frog): 733481
Entry
733481            CDS       T01011                                 
Symbol
fip1l1
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
  KO
K14405  pre-mRNA 3'-end-processing factor FIP1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    733481 (fip1l1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    733481 (fip1l1)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     733481 (fip1l1)
SSDB
Motif
Pfam: Fip1
Other DBs
NCBI-GeneID: 733481
NCBI-ProteinID: NP_001037890
Xenbase: XB-GENE-985496
UniProt: Q28IP4
Position
1:39659099..39701504
AA seq 577 aa
MVVSSGTGGSTAPTISSPVSSAVTAPVSASTGAAGGGGGGGGGDEEEEWLYGEENEAAAP
DDDEEDITSSHPVPGIEAEATENGVVKTVTETEDDSESDSDDDDDDVHVTIGDIKTGAPQ
PYGTTPVNLNIKTGGRIYGPTGGKGKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGAD
LSDYFNYGFNEDTWKAYCEKQKRLRMGLDALPVSSTTNKITVQQGRTGNAEKDTVLQSVK
PEFTSPTSLFKPGVPPPSRKTSSAIDVIGQTTTITRVEGRRRGANESNIQVVSEQSPSEV
DNNFIKPPPPFFPPGAPPTHLPPPPLFPPPPNVSTAPPLIPPPGSISFSMQKPSRYGIPI
TVPPPGFPPPPGGPPPSLIPTIESGHSSGYDGRSAPAFPYGSVSFPHMPGSAGPWSSLVD
TAKPWDYYPRREKDRDRERERDRDRDRDRDRDRERVRERERDRERERDHSPSAGAYNSEE
ERYRYKEYSERTERSYERHRERISREKEERHRERRHREKEESSRHKSSRSSRRRHDSEEG
DSHRRHKHKKSKRSKEGKDAGAEPVQESESVESTNAD
NT seq 1734 nt   +upstreamnt  +downstreamnt
atggtggtttcgtcggggacaggcggcagtaccgcccctactatctcctcacccgtctcc
tccgcagtcacagcccctgtcagcgcctcgaccggggcagcgggaggaggagggggagga
ggcggtggtgacgaggaagaggaatggctgtacggggaagaaaatgaagctgctgcacca
gatgatgatgaagaagacataacaagctctcaccctgtacctggaatcgaagcagaggct
actgagaatggtgttgtgaaaacggtgactgagacagaagatgacagtgaaagtgacagt
gatgatgacgacgatgatgtccatgttaccattggagatattaaaactggagcgcctcag
ccatatggaacaacccctgttaatctaaatattaaaactgggggaagaatatatggacca
acaggaggaaaaggtaaaggggtagatttggatgccccaggaagtattaatggcgtgcct
ctgctggaagtagacttggactcttttgaggacaaaccttggagaaaaccaggtgctgat
ctgtcagactattttaattatggttttaatgaagatacatggaaagcttactgtgaaaaa
caaaagaggctaaggatgggcttggatgcccttccagtttcttctacaacaaataaaatt
acggtacagcagggaagaacgggcaatgcagaaaaagatacagtcttgcagagtgtgaaa
ccagagtttacttctcccacttcattattcaaacctggtgttcctcctccaagtcgaaaa
acctcaagcgcaattgatgtgattggtcagacaaccactatcactcgtgtagagggacgg
cggcgaggtgcaaatgaaagcaatatccaggtagtttcagaacagtctccttctgaagtg
gataataattttatcaagccacccccaccatttttccctcctggagcaccccccacacac
ctaccaccacctccactttttcctccaccaccaaatgtcagtactgctccacctctcatc
ccacctcctggatcaatatcgttctcgatgcaaaaaccatctcgatacggaattcctatc
actgtgccacctccaggtttccctcctcctcctggaggcccgccaccatctcttatccca
acaatagaaagtggtcactcctctggctacgatgggcggtcagctcctgcatttccttat
ggcagtgtgtcttttcctcacatgcctggttctgctggtccgtggtccagtctggtagat
accgccaaaccatgggactactatccaagaagagagaaggatagagaccgcgaaagggag
cgagaccgtgacagagaccgagacagagaccgagaccgtgagcgagtccgtgagagggaa
cgggacagagaacgagagcgagatcacagtccaagcgcaggcgcatataatagtgaggaa
gaacgatacagatacaaggagtatagtgagcgtacggagaggagctatgagcgtcacaga
gagagaatcagcagggaaaaggaggaaaggcacagggaaaggaggcatcgagaaaaagag
gagtcgtctcgtcacaaatcttcccgaagcagcaggcgccgccatgatagcgaagagggc
gatagtcacagaaggcacaaacacaaaaagtccaaaagaagcaaagaagggaaggatgct
ggggccgaacctgtccaagaatcagaaagtgttgaatccaccaatgccgattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (9)   
   UniProt (1)   
   RefSeq(pep) (8)   
DNA sequence (14)   
   RefSeq(nuc) (8)   
   GenBank (3)   
   EMBL (3)   
Protein domain (1)   
   Pfam (1)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system