KEGG   Xenopus tropicalis (tropical clawed frog): 734143
Entry
734143            CDS       T01011                                 
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
  KO
K11650  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    734143 (smarcd2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xtr03021]
    734143 (smarcd2)
   03036 Chromosome and associated proteins [BR:xtr03036]
    734143 (smarcd2)
Transcription machinery [BR:xtr03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     734143 (smarcd2)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    734143 (smarcd2)
   PBAF complex
    734143 (smarcd2)
   GBAF(ncBAF) complex
    734143 (smarcd2)
SSDB
Motif
Pfam: SWIB
Other DBs
NCBI-GeneID: 734143
NCBI-ProteinID: NP_001039267
Xenbase: XB-GENE-489103
UniProt: Q28BL9
Position
10:complement(15729876..15742712)
AA seq 480 aa
MTSRGGLPLPSGSPMNMMRGPNPGAYRPPMGPYQRPGMLPGSRMPMPGMHMGSPMLPPYG
GGSPMRPAMNPMIMEPFRKRLLTPSGHPGPSHRRGVKRRKMADKILPQRIRELVPESQAY
MDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTYTPAKPDGEESERVSSWE
LRVEGKLLEDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRMATTQETDGFQVKRP
GDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRANIMQALWLYIKTNKLQDSHEKE
HINCNRYFRQIFNCMRMKFSDIPMKLAGLLQHPDPIIINHTISVDPNDQKKTACYDIEVE
VDDPLKGQMSNFLASTTNQQEIANLDSKIHETIESINTLKTQRDFMLSFSNDPQEFIQDW
LKSQSRDLKIMTDTMGNPEEERHTEFYQQPWAQEAVGRHIFFKVQQRRQELEQVLGLRLT
NT seq 1443 nt   +upstreamnt  +downstreamnt
atgacctctcggggaggattacctctaccatctgggagcccaatgaacatgatgcgggga
ccaaaccctggagcatacagacccccaatggggccttaccagagaccaggtatgcttcca
ggctcccgaatgccaatgcctggcatgcatatgggctcccccatgcttcctccatatggt
gggggttctcctatgagacctgccatgaatccaatgattatggagccatttaggaagagg
ctgctcaccccatcaggacaccctgggccgagccatcgtaggggagtaaagagaagaaag
atggctgacaagatcttgccacagaggatccgtgaactggtgccagagtctcaggcctac
atggacctcttggcatttgagaggaagttggatcagactatagctaggaagcggatggag
atccaagaggccatcaagaagccccttacgcaaaaacgcaagctaaggatttacatctcc
aacacatacactccagccaagcccgacggggaggagagcgaaagagtcagctcttgggag
ctccgagtggaagggaagcttctggaagaccccagcaaacagaagaggaagttctcctcc
ttctttaagagtctcgttatagagctagataaagacctgtatggaccggataatcacctg
gtggagtggcacaggatggcaaccacacaggagacagatgggtttcaagtgaagcgccct
ggagatgtgaatgtgaagtgcaccttgctcctgatgctagaccatcagcccccgcagtac
aagttagaccctcgccttgcacgcttgctaggggttcacactcagacccgtgccaacatc
atgcaggctctctggctctacatcaagaccaataaactgcaggacagccacgagaaggag
cacatcaactgcaaccgctatttcagacagattttcaactgcatgcgcatgaagttctct
gacattccaatgaagctggcgggtttgttacagcacccggaccccatcattattaatcat
accatcagtgtggaccccaatgaccagaagaagactgcatgttatgatatagaagttgag
gttgatgaccctctaaagggtcagatgagcaattttctggcttccaccaccaaccagcaa
gagattgctaacctggattccaagatccatgagaccatagagtctattaatacgctgaag
acccagagagatttcatgttgagcttcagcaacgaccctcaagagtttattcaggactgg
cttaagtcccaaagcagggacctcaagatcatgacggatacaatgggcaacccagaggag
gagagacacactgagttctatcagcagccatgggcacaggaagctgtgggaagacacatc
ttctttaaggtgcagcaacggaggcaagaactggagcaggttttggggctccgtctcacc
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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