KEGG   Yersinia rochesterensis: CH54_1524
Entry
CH54_1524         CDS       T03609                                 
Name
(GenBank) hypothetical protein
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
ykr  Yersinia rochesterensis
Pathway
ykr03420  Nucleotide excision repair
ykr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ykr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CH54_1524
   03430 Mismatch repair
    CH54_1524
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ykr03400]
    CH54_1524
Enzymes [BR:ykr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CH54_1524
DNA repair and recombination proteins [BR:ykr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CH54_1524
   MMR (mismatch excision repair)
    Other MMR factors
     CH54_1524
SSDB
Motif
Pfam: UvrD-helicase AAA_19 AAA_11
Other DBs
NCBI-ProteinID: AJJ37518
Position
complement(1649118..1651109)
AA seq 663 aa
MAPDTAGAKQGGDAMTNSQILDGNDRDAGVVEEICGYLTDIPPRNYFLFAGAGSGKTRTL
VEVLRRLTGVTEHEKGGQLARSLKMYGRSIRVVTYTKNAVSVINGRLGDNNLVSVSTIHS
FCWELINGFNDDIREALIALKEAQLARDTAEAEAKPRGITPAKQRALDEIIDEIEILRAT
EVFIYHPDRNMYGPGALPHNYVLDATAWLLRNKPTLQSILKDRHPIILIDESQDTMKGVL
DSLMILAKKRERDLTLGLLGDHRQRIYMDGHADLPSIVPENWATPELQMNHRSQRRIVTL
INKIWETELEGRTQPVKGSAQHPRTEKAGGTVRLFLGDTSRSPEDKVLSERWCAERMFEV
SCSVAWNQEQYQVLALEHKLVATRGSFLEVYEAMTLLDPHAAAPSGSGDNKGPSTVQILL
NELGHLEACVSNEGIVNEFKATEVFRRYGGLDNMPEDSEARAERTDEMLEAIAIFAMACA
NPESTVAEVLAPVLNAKLFEVDHRLQEAYADKSPAPQAPGRGEDESKQTRMRRGWCALFA
APWKQLKCYRNYLAGISELATHQVVKGSEFKHVMVVMDDALAGGTLIKYDKIFGGTELSP
KDKKNAEAGKETTIDRTLRLLYVTCSRAQESLALVLWSSNPATAMARIKESQWFAEYEIL
IIP
NT seq 1992 nt   +upstreamnt  +downstreamnt
atggctccagacacagctggagccaagcaaggaggtgatgccatgactaactcacagatc
cttgacggcaatgatcgcgatgcaggggtagtagaagagatttgtggctaccttacagac
ataccacctcgtaactacttcctttttgcaggggctggttctggtaaaacacgaacattg
gttgaagttttacgtcgccttactggtgtgaccgagcatgagaaggggggacaattagca
cggtccctgaagatgtatgggcgttcgattagagttgtgacctacaccaaaaatgctgtc
tctgtaatcaacggacgtcttggggacaataatttagtcagtgtatctaccatccattcg
ttttgctgggaattgattaacgggtttaacgatgacatccgtgaggctcttattgcatta
aaagaagcgcaacttgctagagacactgcagaggcggaagcaaaaccgagaggtataact
ccagctaaacaacgcgctctcgacgaaattatagatgaaatcgaaattctgcgagcgaca
gaagtattcatataccatcccgaccgtaatatgtatggtcctggtgctctaccacacaat
tacgtactggacgcgactgcgtggttgcttcggaataaaccgacacttcaaagcattctc
aaagatcgacatccaatcatacttattgatgagtcgcaggacacgatgaaaggtgtactg
gactccttgatgatacttgccaaaaagcgggagagagatttgactcttggtctgctggga
gatcatcgacaacgaatttatatggatggtcatgccgatcttccaagcattgttccggaa
aactgggcaacgcctgagttacaaatgaatcatcgtagtcagcgacggattgttacactg
attaataaaatctgggaaactgaactggaaggcaggacgcaaccagtaaagggttcagca
caacatccccgaacagaaaaagctggtggaacggttcgactcttcttgggggatacatca
cgaagtccagaagataaagtgcttagcgaacgctggtgtgctgagcggatgtttgaagtt
agttgttcagtagcttggaatcaagagcaatatcaggtgcttgcgcttgaacataagctc
gtcgccactcgcggttcgtttcttgaggtgtatgaggcaatgaccctactggatccccac
gccgcagctccatcaggcagtggggacaataaggggccttcaacagtacaaattttgctt
aatgagcttgggcatttagaagcctgcgtgagtaatgaaggaattgtgaatgagttcaag
gcaaccgaagtttttagacgttatggcggtttagacaatatgccagaggactctgaagca
agagctgaacgtactgatgaaatgctcgaggcgatagcgatatttgcaatggcttgtgcc
aaccctgagtcaacggtcgctgaggtattggcaccagtcttaaatgcaaaattatttgaa
gtagatcatcgccttcaggaggcttatgccgacaagtcaccagccccgcaagctcctgga
cgaggtgaggatgagtcaaagcaaacaagaatgcgccgtggatggtgtgcactgtttgct
gctccatggaaacaacttaagtgctatcggaattaccttgctgggatttcagagctcgca
acacatcaggtagttaaaggctctgagttcaagcacgtcatggttgtaatggatgatgct
cttgctggtgggactctcattaagtacgacaagatttttggtggtacggagttaagtcca
aaagataaaaagaatgcagaggcaggtaaggagacaaccatcgaccggactttacgtttg
ctgtacgtgacttgtagcagggcgcaagaatcgcttgccttagttctttggtcgtccaat
ccagctactgctatggctcgaatcaaggagagtcagtggtttgctgaatatgagatactg
ataatcccatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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