KEGG   Yarrowia lipolytica: YALI0F02695g
Entry
YALI0F02695g      CDS       T01033                                 
Name
(RefSeq) YALI0F02695p
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
yli  Yarrowia lipolytica
Pathway
yli03013  Nucleocytoplasmic transport
yli03015  mRNA surveillance pathway
yli03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:yli00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    YALI0F02695g
  09122 Translation
   03013 Nucleocytoplasmic transport
    YALI0F02695g
   03015 mRNA surveillance pathway
    YALI0F02695g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:yli03019]
    YALI0F02695g
   03041 Spliceosome [BR:yli03041]
    YALI0F02695g
   03009 Ribosome biogenesis [BR:yli03009]
    YALI0F02695g
   03012 Translation factors [BR:yli03012]
    YALI0F02695g
Enzymes [BR:yli01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     YALI0F02695g
Messenger RNA biogenesis [BR:yli03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     YALI0F02695g
   mRNA cycle factors
    Stress granule specific factors
     YALI0F02695g
Spliceosome [BR:yli03041]
 Complex C
  Other components
   EJC/TREX
    YALI0F02695g
Ribosome biogenesis [BR:yli03009]
 Eukaryotic type
  90S particles
   Helicases
    YALI0F02695g
Translation factors [BR:yli03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    YALI0F02695g
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 CMS1 AAA_30 UvrD-helicase Helicase_RecD TniB Flavi_DEAD
Other DBs
NCBI-GeneID: 2907785
NCBI-ProteinID: XP_504915
UniProt: Q6C347
Position
F:complement(396063..397256)
AA seq 397 aa
MAEFDRDLDDELEFKTSKDVDVTPTFESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIK
GRDTIAQAQSGTGKTATFSISMLEVIDTKHRETQAMVLSPTRELATQIQSVILALGDYMN
VQCHACIGGTSLSVDMKKLEAGQQVVSGTPGRCLDMIKKGCLRTKNLKMLILDEADELLN
KGFQEQIYDIYRYLPAATQVVVVSATLPHSVLEMTSKFMTDPVRILVKRDELTLEGLKQY
FIAVEQEEWKFDTLCDLYDTLTITQAVIFCNTKKKVDWLTQQMKDNNFTVCSMHGDMAQK
DRDSIMNEFRSGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRK
GVAINFATNDDITTLRDIEQYYSTQIDEMPVNVTDMM
NT seq 1194 nt   +upstreamnt  +downstreamnt
atggccgagtttgatagagatctcgatgacgagctggagttcaagacgtccaaggacgtg
gacgtgacgcccaccttcgagtcgatggatctcaaggacgaccttctgcggggaatctac
gcgtacggcttcgaggctccctctgccatccagtctcgagccatcacacagatcatcaag
ggtcgagataccattgcacaggcacagtccggaacgggaaagacagccactttctctatt
tcgatgttggaggtgattgacaccaagcatcgggaaacacaggccatggttctttctccg
acacgagaactggccacccagatccagagcgtcattctggctctgggcgactacatgaat
gtccagtgccatgcttgcattggtggaacgtcgttgtcggtggacatgaagaagctggag
gctggtcagcaggtggtttctggaacccccggacggtgtctggatatgatcaagaagggc
tgtcttcgaaccaagaacctcaagatgttgattctcgatgaggccgacgagctactaaac
aagggctttcaggagcagatctacgacatttacagatacctgcctgcagccactcaggta
gtggttgtcagtgctactttgcctcactctgttctcgagatgacctccaagttcatgact
gatccggtccgaattctggttaagcgagacgagctgacgctggagggactcaagcagtac
tttattgctgttgagcaagaagagtggaagtttgacacgctgtgcgacctgtacgacaca
ctgactattactcaggccgtcatcttctgcaacacgaaaaagaaggtggactggctgaca
cagcagatgaaagacaacaacttcaccgtgtgttcgatgcacggagatatggctcagaag
gaccgagactcgatcatgaacgagttccgaagcggcaggagccgggtactcatctccact
gacgtttgggcccgaggtatcgatgttcagcaggtgtcgctggtcatcaattatgacctg
cctcccaaccgagagaattacatccatcgaatcggtcgatccggtcgatttggccgaaag
ggtgtggcgatcaactttgctactaacgatgatatcaccactctgagagatatcgagcag
tattatagtactcagatcgatgagatgccggtgaacgtgacggatatgatgtaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (43)   

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