KEGG   Yarrowia lipolytica: YALI0F20724g
Entry
YALI0F20724g      CDS       T01033                                 
Name
(RefSeq) YALI0F20724p
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
yli  Yarrowia lipolytica
Pathway
yli03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:yli00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    YALI0F20724g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:yli03041]
    YALI0F20724g
Enzymes [BR:yli01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     YALI0F20724g
Spliceosome [BR:yli03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    YALI0F20724g
 Complex C
   U5 SnRNP specific factors
    YALI0F20724g
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_25 AAA_16 nSTAND3 AAA_30 SLFN-g3_helicase DUF1870 HHH_5 RNA_pol_A_CTD
Other DBs
NCBI-GeneID: 2908575
NCBI-ProteinID: XP_505676
UniProt: Q6C0Y6
Position
F:join(2763478..2763512,2763591..2769876)
AA seq 2106 aa
MSNNNDMSRYKYEEMSSIVVQADRRHINRESGEDKAIPESLVGKINVKDMGSGVRREVPD
AGVRQQQEKMARKERMTSKPTSVYSSSGLYTPQMPQTREAFELLMAWTGRVLGDVSHETI
CAVTDELIATLRDEKLQDKQRQKEIESIVGKLSNTDFNQAMSLAARLTDYAENQDEEMAD
DGESGVAVVFDGSDDEDAMDLSEDDEDLSDMDGDYVRRVPVAQREGEDEEDMDVEQTVVE
AAKESDSDVIPATEIDSFWLQREIASLVGGDQQESIDLSRRVFDILAGESSLRETENELS
EAFDFDHLDFVAKLCHNRDRVVWITRLQRADGPEKDTVKKQMTSLGLASLVSELHGETET
SEDVDMDVTEDASQTYVPRYIDTQSLVFDQGARLLTSSKVKLPANTTKHSTSQYEEFVIP
APERAIPDANEKVVSIADMPSWTHVGFSDTKSLNRIQSKVFPCAFESDDNMLICAPTGAG
KTNVAFLAMLRCLSHFRAPNGGFRTNDFKMVYIAPLKALVQEQVREFSKRLNSMGLKVSE
LTGDHNLTKQQIAETQLLVTTPEKWDVITRKAADSSYTNLVRLIVIDEIHLLHDERGPVL
ESIVARTTRRSEQTGDPVRIVGLSATLPNFKDVASFLRVGETGLFYFDSTFRPCPLGQRF
LGITEKKAFKRYTAMNDACFDKVIENIKAGHQVIVFVHSRKETAKTARMLRDRAMDEGLL
PLFCASDGSRRTLAERAQDPELDATQKEIIGTGLATHHAGLAQVDRKAAEELFAEGHVRV
LVSTATLAWGVNLPAHTVIIKGTQIYNPAKGQWTELSPQDVLQMLGRAGRPRYDDSGEGI
IITTHGELNYYLSLMNQQLPIESQLMSRLEDSLNAEVVGGTVSSVGDGIQWLGYTYLYVR
MLVSPGIYLVGSNPDDAALTNRRADLVHSALSNLAKSGLVIYDTKTGRVRANDLGRVAAH
YYITHSSMRTYRISLKPHFSIVELFQVFSASEEFKYVGVRQEEKLELGKLLESAPIPVRE
SVEDSTAKINVLLQAFISRLSLEGFALVSDMIYVTQSAQRLFRAIYEFCLRKKWARLARI
TLDVCKMVEQRLWLSSCPLRQFPDCPAEVAKKIEASAMPWKRYLSLENAEQVGEAIRTPR
YGTPVFRMLQKFPQLKLSARALPVTASLVRLEIEVEPSFEWDVSIHHGSEPFALTVEDGD
GEKILYSDSWTLRRDYATETHLIEVSVTVADPRPPHLFVTLSSERWLHADARLAVPLRNI
VFPGKFPAPTQLIDLQPVPVVELKRADCAGLYDFSFFNKIQSQLFRPLVEGDGSVFVGAP
PGSGKTVLAELALLRLWNEDADAKTVYLAPTQAQVDARYDDWSQRMNEIHGGKTFSKLSG
ELAADLRKLATSDVVLATPNQWDSLSRRWQKRAAVRAVSLFIADDVHLVGGDGTYETVVS
RMRYIDVQLQESGAGRPLRIVGLGVPVADGVDMAGWLDATPYNFKPWTASPTNIHIQSLS
IPHHPSLMQAFLRPTYNAILELAPPKHSQTVIFVDSRRTLVDVTIGLSTIADEQVLVPPV
PEDSNLELAMAQVTDNTLKEAIQSGIGHLYPSMSSRDRKIVLALYAEQSISTIIATREEC
WTSPRSQLSVILGTQTYEGSEHRYVNYPISTVLQMIGQASNDALVLTPAAAKDYYLRFLN
DSLPVESNLGASLHDALLAEICEKVIESMDDTVAWLTYTYLYRRLHANPGFYGVPDRSDD
ALNVYLSELAETTVEQLVEAKMVEMDDEGGLEPLNAASIASYYNVSFDTMATLTSALSPK
SKYRSILQAVTTAAEFDSLPIRNHEDILLRRLYGHIPWKLPELDSAVLLTPAFKAFVLAQ
CHIARLNLPSELTADQAEVVQLLPTLLAASVDLLASEGHQSCMYAMDLSQMVVQATLESD
SPLRQVPFFTPEIIDDLRGAGVEAVGDISELDEDKLKGILNFTAKQLKRVIDFVDAYPSI
QLSYELADSYATNDVGTIEVTVERDVYEEDERANLEVVAPLFPQPKTENWWIVVGNTKTK
QIFGIKRVTLPLESQTFNIDVSFPEHGEVSGHVWCICDSYVDADAEKKFTVTVAEGEEAE
EVEMEE
NT seq 6321 nt   +upstreamnt  +downstreamnt
atgtcgaacaacaatgacatgtctcgttacaaatacgaggagatgtcctctattgtggtg
caggccgatagaaggcacatcaacagagagagtggcgaagacaaggctattcccgagtct
ttagtgggaaagatcaacgttaaggatatgggatctggtgtgcgacgggaggttccggat
gctggggttcgtcaacagcaggaaaagatggcacgcaaggaacgaatgacttccaagcct
acttcggtctactcttccagcggtttgtacactccacaaatgcctcaaactcgtgaagcg
tttgagctgctcatggcatggacggggcgtgttcttggggatgtatcacacgagactatc
tgtgctgttacggacgagttgatcgctactctacgagacgagaagctgcaggacaagcag
cggcaaaaggagatagagagcattgttggaaaactatccaacacggacttcaaccaggcc
atgagtttggctgctcgtcttactgactatgctgagaatcaggacgaggagatggctgac
gatggagagagcggagtggctgtggttttcgacggaagcgacgacgaggacgccatggac
ctttccgaagatgatgaggatttgagtgatatggacggcgattacgttcgacgtgtgcct
gttgctcagagggagggcgaggatgaggaagatatggacgtggagcagactgttgtggag
gctgccaaggagtccgattcagacgtaatccctgctacagaaatcgactcgttctggcta
caacgtgaaattgcatccctagtcggtggtgatcaacaggagagtattgatctatctcgt
cgggtgtttgatattcttgccggggagtcttctctgcgtgagactgagaacgaactgtct
gaggcctttgatttcgaccatctcgactttgtcgccaagctgtgtcataacagagaccgc
gttgtttggattacacgacttcagcgagccgatggacctgagaaggacactgtgaagaag
cagatgacgtctttgggactggcatctctcgtctctgagctacacggtgaaacggagact
tcggaagatgtggatatggacgtcacagaagatgcttctcagacttacgttcccagatac
attgatacacagtcacttgtgtttgatcagggtgctagactcctgacatcttcgaaggtc
aagctcccagcaaacactacaaaacacagcaccagtcagtacgaagagtttgtcattcct
gctcctgaaagagctatccctgatgctaatgagaaggtggtatcaatcgctgatatgcct
tcttggacacatgttggcttttctgataccaagtctctcaatcgaattcagagcaaggtg
ttcccctgtgcattcgaatctgacgacaacatgcttatttgtgcacccaccggtgctggt
aagaccaatgttgcattcctggccatgctgcggtgcctgtctcatttcagagctcccaat
ggaggctttagaaccaatgacttcaagatggtgtacattgccccgctcaaggctctggtc
caggagcaggtccgagagttcagcaagcgactcaactccatgggattgaaagtgtccgag
ttgactggtgatcataatctgactaagcagcagattgcagagactcagctgctggtgacc
acgccggaaaaatgggatgtcatcacccgaaaggctgccgattccagctacaccaacctc
gtcagactgattgttattgatgagattcatttgctgcatgatgagcgaggacctgtcctt
gaaagcattgttgcgcgaacaacacgtcggtcagagcagactggagaccctgttcgaatc
gttggtctctctgccacgcttcccaacttcaaggatgtcgcatcgtttcttcgagttggt
gagacaggtcttttctactttgattccacttttagaccttgtcctctgggacagcggttc
cttggtatcaccgagaagaaagctttcaagcgatacacagccatgaacgacgcatgcttc
gacaaagtgattgaaaacatcaaggctggacaccaggtgattgtctttgtgcactcccga
aaggagaccgccaagacagctcgaatgctgcgagatcgtgccatggacgagggcctgctg
cctcttttttgtgcctctgatggcagtcgtcgaactcttgcagagcgtgcccaagatcct
gaactcgatgccacacagaaagagatcatcggaactggtctcgctacccatcatgctggt
cttgcacaggttgaccgtaaggctgcggaggagctctttgctgagggacatgtccgtgtt
ttggtgtctactgccactctggcttggggtgtcaatcttcccgcacataccgtcatcatc
aagggtactcaaatttacaatcctgccaagggtcaatggaccgagctgtctcctcaggac
gttctccagatgcttggtcgtgctggtcgacctcgatacgacgactctggtgaaggtatc
atcattactacccacggggaactcaactactatctgtcgctgatgaaccaacaactccct
attgagtctcagcttatgtcacggctggaggattctcttaacgcagaggttgtcggtggc
acagtttcttcggtgggtgatggtattcagtggctaggttatacttacctctacgtccga
atgcttgtttctcctggtatataccttgttggatctaatcccgatgatgccgctcttact
aaccgacgtgccgacctcgttcattcggctctcagcaacctggccaagtctggtctcgtc
atctacgacaccaagactggccgtgtgcgtgccaacgatctaggtagagtggctgcacat
tactacatcactcactcgtctatgcgaacataccgaatttctctcaagccccatttctcc
attgtggagctgttccaggtgttctccgcctctgaggagttcaaatatgtgggagttcgc
caagaagagaagctagagttgggaaagttgctggaatcggcacccatccctgttcgagag
tccgttgaggactccactgccaagatcaacgttcttcttcaggctttcatttcccgactg
agtctcgagggctttgcactggtatccgatatgatatacgtgacccaaagtgcccagcgt
ctgttccgagccatctatgagttctgtctgagaaagaaatgggctcgactagcccgaatt
acccttgacgtgtgcaagatggttgagcagcgtctgtggctatcctcttgtcctctccgt
cagtttcctgactgccctgctgaggttgccaagaaaattgaggcttctgctatgccttgg
aagcggtacttatcgctggagaatgcagaacaggttggagaagctatccgaactcctcga
tatggcactcctgtgttccgaatgcttcagaagttcccccagctcaagctgtctgctcgc
gcactgcccgttactgcctctctcgtgcgactggagattgaggtggagcccagttttgag
tgggacgtttctattcaccatggttccgagccttttgctctgactgtggaagacggagac
ggtgagaagattctttactcggactcgtggaccctacggcgagattacgccactgagact
cacttaattgaggtgtctgtcactgttgctgacccccgacctcctcatctatttgtgact
ctgtcttccgagagatggttgcacgccgacgctcgtctggctgtgcctttgcgaaacatt
gtcttcccaggaaagttcccagcccctactcagcttattgatctgcagcctgtccctgtt
gttgagctaaagcgagccgattgcgccgggctctacgacttttctttcttcaacaagatc
caatcgcagctgttcagacctcttgtggagggcgacggctccgtctttgttggagctcct
cctgggtctggtaagactgttctcgccgagctggctctactgagactgtggaatgaagat
gctgatgccaagactgtgtacttggctcccacacaagcccaagttgatgctcgctacgat
gattggagtcagcgaatgaacgagattcatggaggaaagaccttctcaaagctgtctggt
gagcttgctgctgacttacggaagctggccacctccgatgtggttttggccactcctaac
cagtgggattctttgtctcgacggtggcagaagcgagctgctgtcagagctgtaagcctg
ttcattgccgacgacgtgcatctggttggcggcgatggtacctacgagactgtcgtttct
cgaatgagatatatcgatgtacagttgcaggagagtggtgctggacgacctcttagaatt
gtcggactgggtgttcctgttgccgatggagtagatatggctggatggcttgacgccact
ccctacaacttcaaaccttggactgcttctcctaccaatatccacattcagtcgttgtcc
atccctcatcacccttctctcatgcaggctttccttcgacctacatacaatgccattctt
gagcttgctccccccaagcactcccagactgtgatctttgtggactctcgtcgaactctt
gtggatgtgaccattggtctttccacgattgcggacgagcaagttctggtgcctcctgtt
cctgaggactccaatttggagcttgctatggcacaggtgactgacaacactctcaaggag
gccattcagagcggtattggccacctctaccccagcatgtcttccagagaccgtaagatt
gtgttggcactgtatgctgagcagtccatctccacaatcattgctacccgtgaggaatgt
tggacctcgcctcgttctcaactgagtgtcattcttggtacccagacctacgagggatct
gagcaccgatacgtcaactaccccatctctacggtcttgcagatgattggacaggcttcc
aacgacgccctggtgctgactcccgctgctgccaaggactactacctgcggttcctcaac
gattctcttcctgtggaatccaacttgggagcatccctacatgatgctcttttggcagag
atctgtgagaaagtgatagagtccatggatgacactgtggcctggttaacctacacgtac
ctgtaccgacgcctgcatgccaatcctggtttctacggtgtccctgaccgatcagatgat
gctctcaacgtctatctttctgagctcgctgagactactgtagaacagcttgttgaggca
aagatggtcgagatggacgacgagggtggattggagcctctcaatgctgcatccattgca
tcctactacaacgtgtctttcgatactatggctactctcacatctgccctctctcccaag
agtaagtatagatctatcttgcaggctgtcaccactgcagctgagtttgactctcttccc
atccgaaaccacgaggacattctgttgagacgtctttatggccacatcccctggaagctt
cccgagctggactctgctgttcttctcactcctgctttcaaggcctttgtgctggctcaa
tgtcatattgctcggctgaatctcccttcggagttgactgctgatcaggccgaggttgtc
cagctgctgcctaccctgctggctgcctctgttgatcttctggcttctgagggccatcaa
tcatgcatgtacgcaatggacctgtcccaaatggttgttcaagctactcttgagtctgat
tcgcctctgcgacaggtgccttttttcactcccgaaatcatcgacgatctcaggggggcg
ggggttgaggcagtcggagacatttccgagctggacgaggacaagctcaagggcattctc
aactttactgcgaagcaactcaagcgtgtcattgactttgtggacgcctacccaagtatt
cagctcagctatgagcttgctgactcttacgctactaacgatgtcggaaccatcgaggtc
actgtggagagagatgtgtacgaggaggatgagcgtgctaatctggaggtggttgctccc
ctgttcccccagcccaagacggagaactggtggatcgtggttggaaataccaagacaaag
cagatttttggtatcaagcgagtcaccttgcctctcgagtcccagactttcaacatcgat
gtctcgttccccgagcatggagaggtcagtggtcacgtttggtgcatttgcgactcgtat
gttgatgcggatgccgagaagaagttcacagtgactgtggctgagggtgaggaagcggaa
gaggttgaaatggaggagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (67)   

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