KEGG   Yersinia pseudotuberculosis IP 32953 (serotype I): YPTB2988
Entry
YPTB2988          CDS       T00195                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha chain
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
yps  Yersinia pseudotuberculosis IP 32953 (serotype I)
Pathway
yps03030  DNA replication
yps03430  Mismatch repair
yps03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:yps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    YPTB2988 (dnaE)
   03430 Mismatch repair
    YPTB2988 (dnaE)
   03440 Homologous recombination
    YPTB2988 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yps03032]
    YPTB2988 (dnaE)
   03400 DNA repair and recombination proteins [BR:yps03400]
    YPTB2988 (dnaE)
Enzymes [BR:yps01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     YPTB2988 (dnaE)
DNA replication proteins [BR:yps03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     YPTB2988 (dnaE)
DNA repair and recombination proteins [BR:yps03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     YPTB2988 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP DNA_pol_IIIA_C HHH_6 tRNA_anti-codon MutS_II
Other DBs
NCBI-ProteinID: CAH22226
UniProt: Q667K4
Position
complement(3523794..3527309)
AA seq 1171 aa
MIQSTHFWYLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCG
LVKFYGSAHGAGIKPIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY
GAAGPIIDRDWLIKHKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLE
LIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPK
RPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEMSTE
DFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQ
WSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCME
KRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGM
TLEKAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY
CDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASI
PLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVD
NFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLR
RAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSY
QTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDG
EIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFD
RLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVV
LDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTK
RGNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARE
LMDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQREDARARLR
FGATWRVTPTDRLLIDLRTLVGNEQVELEFD
NT seq 3516 nt   +upstreamnt  +downstreamnt
atgattcaatccactcatttctggtatctggatatggccgaacctcgttttgtccacctg
cgtgttcatagcgattattccatgatcgatggattagctaagattggacctttggtgaaa
agagctgctgcattaggtatgcctgctctggctattaccgattttactaacctctgtggc
ctggtgaaattctacggcagcgcgcatggtgcggggattaaacccatcatcggtgctgac
ttctacgtacaaagtgaaatactgggtgatgaattagctcacctcacggttttggctcgc
aataatgaaggctatcaaaatctgactttattgatctcagaagcctaccaacggggttat
ggcgctgcgggtcctatcattgatcgcgattggctgatcaaacataaagaaggactcatt
ctgctgtctggtggccgaatgggggatgtgggcaaatttctgctacggggtaaccaggtt
caggttgatcaatgtctcgccttttatcaggaacactttccagactgctattacctcgaa
cttattcgaaccgggcgtccagacgaagaaaactatcttcatgctgccgtggcattggcc
actgagcgtggtttacctgtcgttgcgaccaatgatgtgcgttttattgatgaatcggat
tttgatgcccatgaaatccgtgtcgctatccatgatggttttacattggtcgatcctaaa
cggccgaagaattacagccctcagcagtttatgcgcgatgaagaacagatgtgtgagctg
ttcgctgatattccagaagcgttgatcaacagcgttgagatagccaaacgctgtaatgtc
actattcgccttggggaatatttcttaccgcagttccccacaggggagatgagtacagaa
gattttctggtagaaaaagccaaacaaggtttggaagaacgtttggaatttctgtttccg
gaccctgaggttaggctgcaaaaacggccagaatatgatgaacgtctggatatcgagctc
aaagttatcaaccaaatgggcttccctggttacttcctgattgtaatggagtttatccag
tggtcgaaagataacggcgtaccggtggggccggggcgtggctctggtgcaggctcattg
gtggcttatgccctgaaaattactgatattgacccactggaatttgatctactgttcgag
cgcttccttaatccggaacgtgtatcgatgcctgacttcgacgttgacttctgtatggag
aaacgtgatctggtgatcgaacacgtggcggaaatgtatggccgcgatgcggtttcccag
ataattaccttcggtaccatggcggctaaagcggtcatccgcgatgtcggccgtgtatta
ggccatccctatggctttgttgatcggatctcaaaattaatcccactcgatccggggatg
acactggaaaaagcgtttgcagcggagccacagctagctgaaatttatgaagctgatgaa
gaggtcagggcgctaattgatatggcgcgtaagctggaaggagtaacgcgaaacgccggg
aaacatgctggaggcgtggttattgcccccactaagattaccgattttgccccactctat
tgtgatgcggaaggcaataacccagttacgcagtttgataaaaatgatgtggaatatgct
gggctggtgaagtttgacttcctcggtctacgtacactaaccatcattaattgggcgttg
gagatgattaacgcccggcgcgctaaaactggattggaacccattgatatcgcctctatt
ccgctggaggataaaaaaagcttcgatatgctgcaacgttcggaaacgacagcagtattc
cagctggaatccagagggatgaaagacttgatcaagcgcctgaagcccgactgcttcgag
gacatgatcgccttagtggcgttatttcgtcccggtccgttacaatcagggatggttgat
aactttattgaccgtaaacacggccgggaagcgatatcttacccagatattgagtggcaa
catgaatccttgaaacctgtgcttgagccgacctacggcattatcttgtatcaggaacag
gtcatgcaaattgcgcaggttctgtccggctactcactgggtggtgcggacatgttgcgt
cgtgccatgggtaagaaaaaccctgctgagatggctaagcagcgttctgtatttgaagat
ggtgcgaaaaatcagggtattgatggtgagctggcgattaaaatctttgacctggttgag
aaatttgcaggttacggttttaacaaatctcactcggcagcttatgcattagtctcctat
caaacgttgtggttaaaagcccattatccggctgaatttatggctgcagtaatgaccgct
gatatggataatacggacaaagtggtcggcttggtcgatgaatgctggcgtatggggctg
aaaattctgccccctgacatcaacagcggtttgtaccatttccatgtaaacgatgatggc
gaaattgtttatggtattggtgccattaaaggtgtaggtgaggggccgatagaagccatt
ctggaggcgcgtaaagaggggggctattttaaagagttatttgacctatgcgcccgtgtc
gataccaaaaagcttaacaagcgtattttagaaaaactgatcatgtccggtgcatttgac
cgtttggggccacaccgtgcagcattgatgagttctctcggggatgcgcttaaagccgca
gatcaacatgctaaagccgaagcaattggtcaggtagatatgtttggtgtattagccgac
gcgcctgagcaggttgagcaatcctatgccaatgtgccgccatggcaggagcaggttgtt
ttagatggtgaacgggaaacgctggggctgtatttaactggccatccgatcactcagtac
ctcaaggaaatcgaacgctatgccggtgggatgcgtttgaaggatatgcatccgacggat
cggggcaaaatgaccaccgcagtggggttggtgatcgcggcaagggttatggtcacaaaa
cgtggtaatcgcattggtatttgtacgctagatgaccgctctggtcgtctggaggtgatg
ttattcaccgatgcattggaaaaatatcagcatttattggaaaaagaccgtatcctgata
gccaccggacaggtcagctttgatgactttagtggtgggcttaaaatgaccgcccgtgag
ttaatggacatcagtgaagctcgtgaaaaatatgcccgtgggcttgctatctcgctgact
gacaggcaaattgatgaccagcttttgaaccgtctccgtcagtcgttggaaccccatcga
gcggggacgatcccagtacatctttattaccaacgggaagatgctcgcgcccggctgcgg
tttggagccacatggcgcgtgacgcccaccgatcgcttattaatcgatttgcgaacgttg
gtaggtaatgagcaagtggaactggaatttgactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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