KEGG   Yersinia pestis Shasta: BZ15_3841
Entry
BZ15_3841         CDS       T03718                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ypv  Yersinia pestis Shasta
Pathway
ypv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ypv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BZ15_3841 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ypv03021]
    BZ15_3841 (rho)
   03019 Messenger RNA biogenesis [BR:ypv03019]
    BZ15_3841 (rho)
Transcription machinery [BR:ypv03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BZ15_3841 (rho)
Messenger RNA biogenesis [BR:ypv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BZ15_3841 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA_22 AAA FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: AJJ49308
UniProt: A0A3G5L0H7
Position
4245147..4246406
AA seq 419 aa
MNLTELKNTPVSDLITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDF
NRSGTRKEELLTTTDELQKMWILRRILHPMGEIDAMEFLISKLATAKTNDQFFDNMRRS
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatcttaccgaattaaagaatacgccggtttctgatctgataacacttggcgaaaat
atggggctggaaaacctggcccggatgcgtaaacaagatattattttctctattctaaag
cagcatgccaaaagtggagaagatatcttcggtgacggtgtattggagatattgcaggat
ggatttggtttcctccgctctgcagacagctcctacctcgccggtcctgacgacatctat
gtatccccaagccaaattcgccgtttcaacctccgcactggtgataccgttgccggtaag
attcgtccgcctaaagaaggcgagcgttattttgcattgttgaaagttaatgaagttaac
tatgacaagccggaaaacgcccgtaataaaatcctattcgaaaacttaacgccgttacat
gccaactctcgtctgcgcatggaacgtggtaatggttcgactgaagatttaaccgcccgt
gtactggatttggcatcgccaattggtcgtggccaacgtggtctgattgtggccccacca
aaagccggtaaaactatgctgttgcagaacatcgcgaccagcattgcttacaatcaccct
gattgtgttttgatggtattgctgattgacgagcgtccagaagaagtaaccgagatgcaa
cgtctggttaaaggtgaagttattgcttctacttttgatgaaccagcatcccgtcacgtt
caagtcgctgaaatggttatcgagaaagcaaaacgtctggttgagcataaaaaagacgtt
attatcttgctggactctattacccgtttagcccgtgcttacaacaccgttgtacctgct
tcaggcaaagtattgaccggtggtgttgatgcgaacgcgttacatcgccctaaacgcttc
tttggtgccgcacgtaatgttgaagagggcggaagcctgaccatcattgcaaccgcgctg
gttgataccggttctaaaatggatgaagttatctacgaagaatttaaaggtaccggtaac
atggaattgcatctgtcccgtaaaattgcggagaaacgtgtattcccagccattgacttc
aaccgctctggtacccgtaaagaagagttgctgactacgactgatgagctacaaaaaatg
tggatcttgcgccgaattcttcatccaatgggtgaaattgatgcaatggaattcctcatc
agtaagctggcgactgcgaaaactaacgatcagttctttgataatatgagacgctcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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