KEGG   Yersinia pseudotuberculosis YPIII (serotype O 3): YPK_2033
Entry
YPK_2033          CDS       T00665                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
ypy  Yersinia pseudotuberculosis YPIII (serotype O:3)
Brite
KEGG Orthology (KO) [BR:ypy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ypy03032]
    YPK_2033
   03400 DNA repair and recombination proteins [BR:ypy03400]
    YPK_2033
Enzymes [BR:ypy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     YPK_2033
DNA replication proteins [BR:ypy03032]
 Prokaryotic type
  DNA Topoisomerases
   YPK_2033
DNA repair and recombination proteins [BR:ypy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      YPK_2033
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Zn_ribbon_recom Toprim_4
Other DBs
NCBI-ProteinID: ACA68320
UniProt: A0A0H3B3W4
Position
complement(2263875..2266490)
AA seq 871 aa
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSANSAEEKAKKDDK
PKKKVKKDEKVALVNRMGVDPYHGWKAQYEILPGKEKVVAELKALAENADHIYLATDLDR
EGEAIAWHLREVIGGDDKRFSRVVFNEITKNAIQQAFNQPGELNISRVNAQQARRFMDRV
VGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREKEIKAFVPEEYWELHADLVAKGDIPI
QMEVTHAHGKPFKPVNREQTHAALTLLENARYKVLDREDKPTSSKPSAPFITSTLQQAAS
TRLSFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALTMVRGYIGDNFGDKYLPATPNQ
YSSKENSQEAHEAIRPSDVNVLAEQLKDMEADAQRLYQLIWRQFVACQMPPAKYDSTTLT
VQAGDFQLRAKGRTLRFDGWTKVMPALRKGDEDRTLPVIEVGSDLDLQKLIPSQHFTKPP
ARYSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENF
RELMNYDFTARMESGLDQVANDQAEWKAVLDGFFAEFSEQLEKAEKDPEEGGMRPNQMVM
TSIDCPTCGRQMGIRTASTGVFLGCSGYALPPKERCKTTINLVPDAEILNILEGDDAETN
ALRARRRCQKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEAGEFRIKGYEGPIVECEKC
GSEMHLKMGRFGKYMGCTNDECKNTRKILRSGEVAPPKEDPVPLPELPCEKSDAYFVLRD
GAAGVFLAANTFPKSRETRAPLVEELVRFKDRLPEKLRYLADAPVVDKEGNKTLVRFSRK
TKQQYVSSEKDGKATGWSAFYIDGKWVEAKK
NT seq 2616 nt   +upstreamnt  +downstreamnt
atgggtaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataaatac
ttagggaatgattacgtggttaagtccagcgtcggtcacattcgtgatttgccgaccagt
ggctcagccagtaaaaagagcgctaactcagctgaagaaaaagccaaaaaagacgataaa
cccaaaaagaaagtgaagaaagacgaaaaggttgccttagtcaaccgtatgggggtcgat
ccttatcatggctggaaagcgcagtatgaaattttgcctggcaaagagaaagtggttgcc
gagctgaaagcattagcagaaaacgcggatcatatctatctcgcaaccgaccttgatcgc
gaaggtgaggctattgcctggcatttgcgggaagtgatcggtggggacgataaacgtttt
agccgcgttgtctttaacgaaatcaccaagaatgcgattcagcaggcgtttaatcagcct
ggtgaactgaacatcagccgtgtaaatgcacaacaagcccggcgttttatggatcgggtt
gttggctatatggtctctccactgttgtggaagaaaattgcccgtggcctgtcagctggc
cgtgtacagtcagttgctgtgcgccttgtggttgaacgtgaaaaagagattaaagcattc
gttcctgaagaatattgggagctacatgcagatttagtggctaaaggtgacattccgatt
caaatggaagtcactcatgcccatggcaagccatttaaaccggtaaatcgtgagcaaaca
catgcagcgctgacgttactggaaaatgcccgttataaggtgttggatcgtgaagataaa
ccgaccagcagtaagcccagcgcacccttcattacctccaccttacagcaggcggcaagt
acccgtctgagttttggtgtgaaaaaaaccatgatgatggcacagcgcctgtatgaagcg
ggtcatatcacctacatgcgtaccgactcgactaatttgagtcaggatgcattgacgatg
gtacgtggttatatcggcgataattttggtgataagtatctgcctgcaacgcctaaccaa
tacagcagcaaagagaattcgcaggaagcgcatgaggccatccgcccttcagatgtcaat
gtgttagctgagcagttgaaagatatggaagcggatgcccagaggttgtaccaattgatt
tggcgtcagtttgtggcgtgccagatgcctccggccaagtatgactcgaccacactgaca
gtgcaggcgggggatttccaactgcgcgccaaaggccgcacattgcgctttgatggttgg
accaaggttatgcctgcgctgcgtaaaggtgatgaagatcgcaccttgccggtgattgaa
gtgggcagtgatttagacttacaaaaactgattccgagccagcattttaccaagccaccg
gctcgttatagtgaagcatcattagtgaaagagctggaaaaacggggtattggccgtcca
tcgacttatgcctctattatttcgaccattcaagatcgtggctatgtgcgggtagaaaac
cgtcgcttctacgcagagaaaatgggtgaaattgtgacagaccgcttggaagaaaacttc
cgcgagctgatgaattacgatttcacggcacgaatggaaagcggtttggatcaagtcgcc
aatgatcaggccgaatggaaagcggtgctggatggcttctttgctgaattcagcgagcag
cttgaaaaggcagaaaaagatcctgaagaaggaggaatgcgcccgaatcagatggtgatg
accagcattgattgcccaacctgtggccgtcagatggggatccgtactgcgagtactggg
gtgttccttggctgttccggttatgcattgccgcctaaagagcgctgtaaaaccaccatt
aacttggtgccggacgctgagattttgaatattctggagggtgatgatgcggagactaac
gcattacgtgcccgccgccgttgccagaaatgtggtactgcgatggatagctaccttatc
gataatcaacgcaagttacatgtttgcgggaataacccagcgtgtgatggctatgaaatc
gaagcaggtgagttccggataaaaggctatgaaggcccaattgttgagtgcgagaaatgt
ggttctgaaatgcacctgaaaatggggcgcttcggtaagtacatgggctgcaccaatgac
gagtgtaagaatacccgcaagattctgcgcagcggtgaagttgcaccaccgaaagaagat
ccggtaccattgccagagttgccttgcgagaaatcagatgcttatttcgtcctacgagat
ggcgcagctggcgtgttcttggcagccaatacattccctaaatcgcgtgaaacccgtgcg
ccgctggtagaagaattggttcgctttaaagaccgtttgcctgagaagttgcgttatctg
gctgatgcccctgtggttgataaagagggtaataaaaccctggtccgtttcagccgtaaa
acgaagcaacagtatgtttcatcagagaaagatggcaaagcaacaggctggtctgctttc
tatattgatggtaaatgggttgaggcaaagaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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