KEGG   Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_07055
Entry
UGYR_07055        CDS       T03887                                 
Name
(GenBank) ssDNA exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
yrb  Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb03410  Base excision repair
yrb03430  Mismatch repair
yrb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:yrb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    UGYR_07055
   03430 Mismatch repair
    UGYR_07055
   03440 Homologous recombination
    UGYR_07055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:yrb03400]
    UGYR_07055
DNA repair and recombination proteins [BR:yrb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     UGYR_07055
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     UGYR_07055
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      UGYR_07055
SSDB
Motif
Pfam: DHHA1 DHH RecJ_OB
Other DBs
NCBI-ProteinID: AKA38174
Position
complement(1528662..1530395)
AA seq 577 aa
MTIKTQLRRREAADESGLPAELHPLLRRLYATRGLKSPDELERSVKGLQPYGLLDGIEAG
VNLLQQALVERQRIMIVGDFDADGATSTALAVLSLRSMGCGNVDYLVPNRFDDGYGLSPE
VVEQVAARGADLIVTVDNGISSHTGVDLAHVKGIKVLVTDHHLPGEVLPAAEAIINPNLV
GCDFPSKSLAGVGVTFYLMLALRARLRESGWFEQRALAIPNLAELLDLVALGTVADVVPL
DANNRILVHQGLSRIRAGKCRPGIKALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDM
SIGVALLLSDDIAQARALAIDLDTLNLTRREIEQSMQVEALQLCEQLERTSSELPYGIAM
YHAEWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSVAGLHMRDALERLDTLNP
GLMLKFGGHAMAAGLSLEQDKFDEFRQRFAALVGEWMDPSQLEGVIWSDGELTGVQLTLE
TAELLRDGGPWGQAFPEPTFDGKFRLLQQRLVGERHLKLMLEPLSGGPLLDGIAFNIDTT
LWPDSSVREVKLAYKLDINEFRGNRSVQLLIQHIWPY
NT seq 1734 nt   +upstreamnt  +downstreamnt
gtgacgataaaaactcaactccgtcgtcgcgaggccgctgatgaaagtggcctgccggca
gaattacacccattgctgcgccgcctatatgccacgcgtgggctgaaaagcccagatgaa
ctggagcgtagtgttaaaggcctgcaaccttatgggctactggatggcattgaagccggt
gtgaatttattgcaacaagcgctggtcgaacgtcagcgcatcatgattgtgggcgatttt
gatgctgatggtgccactagtacggcattggcggtgttgtcgctccgtagcatgggctgc
ggtaacgttgattacctggtgcctaatcgctttgacgatggttatggtcttagtccagaa
gtggttgagcaggttgcagcgcgtggagccgacttgatcgtcaccgttgataacggtatt
tcttcacatactggagtcgatttggctcatgtgaaagggataaaggttcttgttaccgat
caccatttgccaggtgaagtactgcccgcagcggaagccattatcaacccaaatctggtg
ggttgtgattttccgtcaaaatctctggcaggagtgggggtgactttctatctgatgctg
gcgttgcgtgcgcgtttacgcgagagcggctggttcgaacaacgggctttagccataccg
aatttggctgagctgctggatttggtagcattgggtacggtagccgatgtggtgccactg
gatgccaataaccgtattttggtgcatcaaggattgagccgtattcgcgccggaaaatgc
cgcccaggcatcaaagcgctgctagaagtggcaaatcgtgacgctcgccaactggctgct
aacgatttgggcttttctctcgggccacgcttgaatgctgccggtcgactggatgatatg
tccattggggtcgcgttattgttgagtgacgacatcgctcaggctcgagcgctggccatt
gatttggatactctgaatctgacgcgccgtgaaattgagcaaagcatgcaagtcgaagcc
ttacaactgtgtgagcaactggaacgcaccagtagcgaattgccttacggtattgccatg
taccacgctgaatggcatcagggcgtcgtgggaattctggcttcacgaatcaaagagcgt
ttccatcgtccggttattgcctttgcgcccgccggcgatgggatattgaaaggctcaggt
cgttcagtcgcaggtctacatatgcgtgatgcactggaacgactagacacattaaacccc
ggtttgatgctgaaattcggtggacacgctatggctgcgggtttatcactggagcaggat
aaatttgatgaattccgccagcggtttgctgccttggtgggtgaatggatggatccctct
cagcttgaaggcgttatctggtcagatggcgaactgactggcgtccaattgacgttggaa
acggcggagttattgcgcgacggcggcccttgggggcaagctttccctgaaccaaccttc
gacggtaaatttcgcctgctacaacagcggctagtgggggaaaggcatcttaaactgatg
ctggaaccgttaagtggcggcccgttactggatggtatcgcattcaatattgatacgact
ttgtggccggatagcagcgtgcgagaggttaaactggcttataaattagatattaatgaa
tttcgcggtaaccgcagtgttcaattgttgattcagcatatctggccctattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system