KEGG   Zobellella denitrificans: AN401_12945
Entry
AN401_12945       CDS       T05100                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
zdf  Zobellella denitrificans
Pathway
zdf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zdf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AN401_12945
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zdf03019]
    AN401_12945
   03009 Ribosome biogenesis [BR:zdf03009]
    AN401_12945
Enzymes [BR:zdf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AN401_12945
Messenger RNA biogenesis [BR:zdf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AN401_12945
Ribosome biogenesis [BR:zdf03009]
 Prokaryotic type
  rRNA helicases
   AN401_12945
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 AAA_16
Other DBs
NCBI-ProteinID: ATG74651
UniProt: A0A231MXL4
Position
complement(2780580..2782361)
AA seq 593 aa
MTNTSVVPAFADLGLAPAVLQALTDAGYEQPSAIQAAAIPTLLTGRDVLGLAQTGTGKTA
AFALPMLSRISGGNAYPQVLVLAPTRELAIQVAESFENYAKYQKDIRILSIYGGQAYDSQ
IRALKRGVDVIVGTPGRVMDHMRRGTLKLDNLQALVLDEADEMLRMGFIDDVEWILEHTP
ESRQIALFSATMPPAIQRVAQKYLKDPQEVRIANKTRTNASIRQRYWFVRGMSKHEALCR
LVETEEMDAMLVFVRTRKDAEDLAEMMVREGHACEALHGDIPQKLREKVVDRLKNGRLNV
LVATDVVARGLDVERISHVVNFDMPHDNESYVHRIGRTGRAGREGDAILFVTGREKRNLF
NLERHTRQPIEEMQMPSADDINKIRAERFKSRIRASVEADEQALAPFVAMIDELQADGMD
TAQLAAGLARLLQGDRPLFVEDRPMAARRPDVRESRDGGRERFERAERADRPRAARGGKD
DVSGVVMETFRVDVGRVHGVKPGHLVGAIANEADLESRYIGQIQIHDDFSTVDLPEGIPA
EIQQVLQKVRVCQRPLNLAKYEGGPLPRRSFRGNNDDRGGKFRPRRNDKRLNG
NT seq 1782 nt   +upstreamnt  +downstreamnt
atgacaaatacttctgttgtacctgctttcgctgacctcggcctggcgcctgccgttctt
caagctctgaccgatgccggttacgagcagccttctgccatccaggccgccgccatcccc
accctgctgaccgggcgggacgtgctgggtctggcgcaaaccggtaccggcaaaaccgcc
gccttcgccctgccgatgctgagccgtatcagcggcggcaatgcctatccccaggtgctg
gtgctggcgccgacccgtgaactcgccatccaggtggccgagtcctttgaaaactacgcc
aagtaccagaaagacattcgcatcctgtccatctacggtggccaggcctacgacagccag
atccgcgccctcaagcgtggtgtcgacgtgatcgtcggtaccccgggccgggtcatggat
cacatgcgtcgcggcaccctcaagctcgacaacctgcaggccctggtgctggacgaagcc
gacgaaatgctgcgcatgggctttatcgacgacgtcgagtggatcctggagcacacgccc
gagagccgccagatcgccctgttttccgccaccatgccgccggccatccagcgcgtggcc
cagaaatacctgaaagatccccaggaagtgcgtatcgccaacaagacccgcaccaatgcc
agcatccgtcagcgttactggttcgtgcgcggcatgagcaagcacgaggccctgtgccgc
ctggtggaaaccgaagagatggacgccatgctggtgttcgtgcgtacccgcaaggatgcc
gaagatctggccgagatgatggtgcgcgaaggccatgcctgcgaagccctgcacggcgat
attccccagaagctgcgcgagaaggtggtcgatcgcctgaaaaacggtcgcctgaacgta
ctggtggccaccgatgtggtcgcccgtggcctggacgtggagcgtatcagccacgtggtc
aacttcgacatgccccacgacaacgagtcctatgtgcaccgcatcggccgtaccggccgt
gccggtcgcgagggcgacgccatcctgttcgtgaccggtcgtgaaaagcgcaacctgttc
aacctggagcgccacacccgccagccgatcgaagaaatgcagatgccgtccgccgacgac
atcaacaagatccgtgccgagcgcttcaagtcccgcatccgtgccagcgtggaagccgac
gagcaggccctggcccccttcgtggcgatgatcgacgaactgcaggccgacggcatggac
accgcccagctggcggccggcctggcccgcctgctgcaaggcgaccgcccgctgttcgtg
gaagaccggccgatggcggcccgccgccccgacgtgcgtgaaagccgtgacggtggccgc
gagcgcttcgagcgtgccgagcgtgccgatcgtccccgcgccgcccggggcggcaaggac
gatgtctccggcgtggtgatggaaaccttccgcgtcgacgtgggccgggtgcacggcgtc
aagccgggccacctggtcggcgccatcgccaacgaggcggatctggaatcccgttacatc
ggccagatccagatccacgacgacttctccaccgtggacctgcccgagggcatcccggcc
gagatccagcaggtgctgcagaaggtgcgcgtctgccagcgtccgctgaacctggccaag
tacgaaggcggcccgctgccccgtcgcagcttccgcggcaacaacgacgaccgcggcggc
aagttccgcccccgtcgcaacgacaagcgcctgaacggctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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