KEGG   Ziziphus jujuba (Chinese jujube): 107413612
Entry
107413612         CDS       T04794                                 
Name
(RefSeq) regulator of nonsense transcripts UPF2
  KO
K14327  regulator of nonsense transcripts 2
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03013  Nucleocytoplasmic transport
zju03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    107413612
   03015 mRNA surveillance pathway
    107413612
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107413612
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     107413612
   mRNA cycle factors
    P-body specific factors
     107413612
SSDB
Motif
Pfam: MIF4G Upf2 DUF1033
Other DBs
NCBI-GeneID: 107413612
NCBI-ProteinID: XP_048325596
Position
8:join(14008670..14008732,14009045..14009132,14009924..14010126,14010206..14010550,14010833..14010937,14011379..14011506,14012710..14012886,14012998..14013079,14013591..14013884,14013987..14014184,14014335..14014436,14014725..14014976,14015065..14015283,14016340..14016510,14017758..14017943,14018742..14019215,14019452..14019952)
AA seq 1195 aa
MDHHEDDGRVGGEHHGKQDDEEAAARLEEVKKSVEAKMALRQSNLNPERPDSGHLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDELRNVNLSKFVSEAVTSICDAKLKSSDIQAAVQIC
SLLHQRYKDFSPSLTQGLLKVFFPGKSGDDQDVDRNLKAMKKRSTLKLLLELYFVGVIED
SGIFVNIIKDLTSVEHLKDRDTTQTNLTLLSSFARQGRIFIGLPLFGQEIHEEFFKGLNI
TAEQKKFFRKALHAYYEAAAELLQSEHTSLRQLEHENAKILNAKGELSDENISSYEKLRK
SYDHLYRNVSSLAEALEMQPPVMPEDGHTTRVTSGEDASSSAGGKDSNVLEAIWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKVNEQSAKTQEQPTESAPESDQGQQAIQDPGEIIADS
GPSQEGKNIEKGKDKEEKDKEKTKDLEKEKAKEKDSDKKGESEKEKLKSLEGTNLDALLQ
RLPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMK
DVSSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPAGLVFSCLKACLDD
FTHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYL
CKPPERSARVTKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWSECEPYLLKCFMKV
HKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQRRIAYMRFLG
ELYNYEHVDSFVIFETLYLILIFGHGTSEQDLLDPPEDCFRIRMVITLLETCGHYFDRGS
SKRKLDRFLMHFQRYILSKGALPLDIEFDLQDLFAELRPNMTRYSSIEEVNAALVEFEEH
EHTISSDKANSEKHSDSEVPSSRSTFKTISANGQSVVNGTEENGRVHHDLGDSDSDSGSG
TVDPEGQDEEELDEENHDGGCDSEEEDDDDDGGGLASDEDDEVHVRPKVTEVDPQEEANF
EQELRAVLQESMEQRRLELRGRPTLNMMIPMNVFEGSMKDHHGRGIGGESGDEALDEEAG
ERKEIQVKVLVKRGNKQQTKQMYIPRDCSLVQSTKQKEAAELEEKQDIKRLVLEYNDREE
EELNGLGTQTLNYMQTGGNRISGRGHTWEGSSGRGGTRHRHHNHSSGGVYYSRKK
NT seq 3588 nt   +upstreamnt  +downstreamnt
atggatcaccatgaggatgatggtcgtgttggaggtgaacatcatggaaagcaagatgat
gaggaagctgctgctcgacttgaggaggtcaagaaatcagtcgaggcaaaaatggctctt
cgacaaagcaatttgaatcctgaaaggcctgattcaggacatctaaggacattggattct
agcatcaaacgcaacactgcagtcattaaaaagctgaaacagataaatgaagagcagcgg
gaagggctgatggatgagttaagaaacgtcaatctcagtaaatttgttagtgaagctgtg
acttctatttgtgatgccaagcttaaaagttcagatatacaagcagctgttcagatctgc
tctttgcttcatcaaagatacaaggacttctcgccaagcctcactcaagggcttttgaaa
gtcttctttcctggaaagtcaggggatgaccaagatgtagacagaaacctgaaggccatg
aagaagcgcagcactcttaaacttcttttggaactttactttgttggagttatagaagac
tctggtatttttgtaaatatcatcaaggatcttactagtgttgaacacttaaaggatcgg
gatactactcagacaaatttgactcttctttctagttttgcacggcaagggagaatattt
attgggcttcctctctttggccaagaaattcatgaagagttttttaagggccttaatatc
acagcagaacaaaagaaatttttcaggaaggcattgcatgcatattatgaagctgcagca
gaactacttcagtctgagcatacttcacttcgtcaattggagcatgaaaatgcaaaaatc
ctcaatgcgaagggagagctaagtgatgaaaatatctcttcctatgaaaagctgcgaaaa
tcttatgaccatttgtatcgcaatgtctcatccttggcagaagcacttgaaatgcagcct
cctgtaatgccagaggatggccacacaactagggttactagtggagaagatgcttcatct
tcggctggcgggaaggattctaatgttttggaagccatatgggatgatgaagacactaga
gccttctatgaatgcttaccagatctcagagcatttgtacccgcagttttattgggggaa
gcagaacccaaagtgaatgagcaatctgcaaagacacaagagcaaccaacagaatcggca
cctgaatcagatcaaggtcaacaggctatacaagatcctggagagattattgcagactct
ggtccttcgcaggagggcaaaaacatagagaaagggaaggacaaggaagagaaagataaa
gaaaagactaaagatctggagaaagagaaagcaaaagaaaaagattctgacaaaaaggga
gagagtgaaaaggagaaacttaaaagtcttgaaggcacaaatttggatgctttattgcag
aggctcccgggttgcgtgagccgtgaccttattgatcaattaactgtggaattttgttac
ctaaattcaaaagcaaaccggaaaaagcttgtgagggcattgtttaatgtcccaagaaca
tcattggaactgcttccatactactcacgcatggttgccacactttcaacttgtatgaag
gatgtttcttccatgctcctacagatgctggaagaggagtttaacttcttaattaataaa
aaggatcaaatgaacattgaaacaaaaattaggaatattaggtttattggagaactctgc
aagtttaggattgcacccgctggccttgtttttagttgtttgaaggcttgtttagatgat
tttactcatcataacattgatgttgcttgcaatcttctggagacctgtggtcgtttcttg
tatcgatcacctgaaactactgttcggatggctaacatgttggagatattgatgcgtttg
aaaaatgtcaaaaatttagatcctcggcatagcaccctggtagaaaatgcttactatctg
tgcaaaccacctgagagatctgcacgagtcacaaaagtccgtcctccattgcatcagtat
ataagaaaattattattttcggatcttgataagtctaccattgagcatgttctgagacaa
cttcgtaaattaccatggagtgaatgtgagccataccttttaaagtgctttatgaaggtt
cacaaagggaagtatggtcagattcacttgattgcttctctcactgctggtttgagtcgc
taccatgatgaatttgctgtggctgttgttgatgaggttttggaagagattcggcttggt
ttagaattgaatgattatgggatgcagcagaggcgcattgcctatatgcgattcttaggg
gagctatacaactatgagcatgtagattcatttgttatttttgagacgctatatttgatt
ctcatctttggccatggcacatcagagcaagacttgctggatccaccagaagattgtttt
cgcatcaggatggttattactcttcttgaaacctgcgggcactactttgaccgaggttct
tctaaaaggaaacttgatcgatttttgatgcactttcagagatatatactcagcaaaggt
gcattaccactagatattgaatttgacttacaggacctatttgcggagttacgccccaac
atgactcgatactcatccattgaggaagtgaatgcagctctggtagaatttgaggagcat
gaacataccatctcatctgacaaggcaaatagtgagaagcactctgactctgaagtgcct
tcgagcaggagtacgttcaaaaccatttcagcaaatggacagagtgttgtgaatggcact
gaggaaaatggtagggtacatcatgaccttggagacagtgacagtgattcggggagtggt
actgttgatcccgagggacaggatgaagaagagttggatgaagagaatcatgatggtgga
tgtgatagtgaggaggaggatgatgacgatgatgggggtggacttgcttctgatgaggat
gatgaagtccatgtaaggccgaaggtgacagaagttgatcctcaggaagaagcaaatttt
gagcaagagctcagggctgttttgcaggagagtatggagcagcgcaggcttgagctgcgc
ggccgacctactttaaatatgatgattccaatgaatgtgtttgaagggtccatgaaggat
catcatggaagggggattggaggggaaagtggtgatgaggcgttagatgaggaggctggg
gaaaggaaggagatccaggtaaaagttcttgtgaagcgtgggaacaagcaacaaacgaag
cagatgtacattcctcgggattgctcgcttgtacagagcacaaaacagaaggaagcagct
gagcttgaagagaaacaagatatcaagaggctggtcttggaatataatgatagagaagag
gaggaactaaatggattagggacccaaactttgaactatatgcagactgggggcaacaga
atttccggccgaggccacacttgggaaggaagcagcggaagaggtggaacacgtcatcgg
catcataaccattccagcgggggagtttattacagcaggaaaaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (39)   

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