KEGG   Ziziphus jujuba (Chinese jujube): 107429064
Entry
107429064         CDS       T04794                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107429064
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zju03041]
    107429064
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107429064
Spliceosome [BR:zju03041]
 Complex C
  Other components
   Step II factors
    107429064
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N DEAD AAA_22 nSTAND3 AAA_19 T2SSE PhoH AAA_30 ATPase SLFN-g3_helicase ABC_tran SRP54 AAA_23
Other DBs
NCBI-GeneID: 107429064
NCBI-ProteinID: XP_015895188
UniProt: A0A6P4AED7
Position
12:join(15985373..15985464,15985619..15985665,15985770..15985850,15985983..15986199,15987193..15987610,15988098..15988301,15989068..15989228,15990057..15990242,15990942..15991173,15991667..15991866,15992010..15992144,15992342..15992525)
AA seq 718 aa
MAQGGLNISSGSHRPNGKFSKDSTKVDSFSRRQKILQHRKSLPIASVERRLIEEVRNNDI
LIIVGETGSGKTTQLPQFLFNAGFSRDGTIIGVTQPRRVAAVTVAKRVAEECGVEVGQKV
GYSIRFEDVTSSSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLK
NVQIARSKSFNYHLDNESKKAKNGMLVEKEKDPQSISFLKECQGKKFPPLKLIIMSASLD
ARIFSEYFGGARAVHIQGRQFPVDIFYTYHAEPDYLDAALITIFQIHMEEGPGDILVFLT
GQEEIESVERLVKERLQKLPENNRKLVIFPIFSSLPSEQQMRVFAPIQAGFRKVILATNI
AETSVTIPGIKYVIDPGFVKARTYDPNKGLESLVVVPISKAQALQRSGRAGREGPGKCFR
LYPEFEFEKLEDSTKPEIKRCNLSNVILQLKAMGVDDIIGFDFIDKPSRSAIVKSLEQLY
LLGALTDECKLSDPVGCQMARLPLDPVYSKALVLASEFKCLEEMLITVAMLSVESIFYAP
REKLEEARTAMKCFSSPEGDHQTLINVYRASDEFLEKRKLGLGQEKIDKILRKWCKENFI
NSRSLRHARDVHSQIREHVEQMGLRLESCGDDMLQFRRCLAASFFLNAAIKQHEGTYRAF
STGQVVQIHPSSVLFRTKPDCIVFNELVQTNHKYVRNITRIDYLWLTELAPQYYAMQS
NT seq 2157 nt   +upstreamnt  +downstreamnt
atggctcaaggaggactcaacatctccagcggaagccatagacccaatggaaagttctcc
aaagacagcactaaagttgattccttttctaggaggcaaaaaatactgcaacacagaaag
tctcttcccattgcttctgttgagagaagactgatcgaagaagttcggaacaatgatatt
ttgattattgttggtgagactggaagcgggaaaaccacacagctaccgcagtttttgttc
aatgctggatttagtcgagatgggacgattattggggtcactcaacctagacgtgtggct
gcagtcactgttgcaaaacgggttgctgaggaatgtggtgtggaggtgggtcaaaaggtt
gggtattccatcagatttgaggatgtaacttctagctcaacaaggatcaaatacatgacg
gatggactgcttctgagggaagcattattggatccttatctgtccagatattcagtcatc
attgttgatgaagctcatgagagaactgtccacactgatgtgttgctgggccttctaaaa
aatgtacaaattgcacggtccaaatctttcaactaccacctagataatgaaagtaaaaag
gcaaagaatggcatgctggtggagaaggaaaaagatcctcagtctatcagttttcttaag
gaatgccaaggaaagaaatttcctccactgaagttgatcatcatgtctgccagtttggac
gcacgtatattctctgagtactttggtggtgcaagagctgttcatatccaagggcgacag
tttcctgtagatatattttatacttatcatgctgaaccagattatttagatgctgcttta
attaccatattccagattcatatggaggagggccctggtgatatacttgtatttttgaca
gggcaagaagagattgaatctgttgaaaggcttgttaaagagcgacttcaaaagttacct
gaaaacaatagaaaactagtaatttttccaatattttcatcccttccatcagaacagcaa
atgcgagtttttgcacctatccaagctggatttcgtaaggtgatattggcaacaaatatt
gctgagacatctgtgacaattcctggaatcaagtatgttatagatcctggatttgtgaaa
gcacgcacttatgatccaaacaaagggttggaatcgttggttgttgttccaatttcaaag
gcacaggctcttcaaagaagtggacgtgctgggagagaaggacctggaaagtgtttccga
ctctacccagagtttgaatttgagaagcttgaggattcaacaaaaccagagatcaagcgc
tgcaacctttctaatgtcattttgcaactcaaggctatgggtgtcgatgatattattggg
tttgacttcattgataaaccttcaaggtcggctattgttaaatcattggagcagttgtac
ttgctaggtgctttaacagatgaatgtaaactgtcagatccagttggatgtcaaatggct
cggcttcctttagaccctgtttattccaaagctcttgttctggctagtgaattcaagtgc
ttggaagaaatgttgataactgttgcaatgctttcagtggaatctatattttatgcccct
cgtgaaaagttagaagaggcaagaactgcaatgaaatgcttttcaagtccagagggggac
catcaaacgcttattaatgtatatcgagcgtcagatgaatttttggagaagaggaagtta
ggtcttgggcaagaaaaaattgataaaatcctcagaaaatggtgcaaggagaattttatc
aatagtcgctccctaaggcatgctcgtgatgtgcacagtcaaattcgagaacatgttgaa
caaatgggtcttcgtcttgaatcttgcggagatgacatgcttcagtttcgcagatgcctt
gcagcttccttttttctcaatgcagctataaagcagcacgagggaacatacagggctttc
tccactggtcaggtggtgcagatccacccctcttctgtgttattccggacaaaaccagat
tgcatagtcttcaatgaactagttcaaactaatcataaatacgtccgcaacataaccaga
attgattacctatggttaactgagctagctcctcaatactatgccatgcagagttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (16)   
   Pfam (16)   
All databases (38)   

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