KEGG   Ziziphus jujuba (Chinese jujube): 107431005
Entry
107431005         CDS       T04794                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A isoform X1
  KO
K07466  replication factor A1
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03030  DNA replication
zju03420  Nucleotide excision repair
zju03430  Mismatch repair
zju03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107431005
   03420 Nucleotide excision repair
    107431005
   03430 Mismatch repair
    107431005
   03440 Homologous recombination
    107431005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:zju03000]
    107431005
   03032 DNA replication proteins [BR:zju03032]
    107431005
   03400 DNA repair and recombination proteins [BR:zju03400]
    107431005
Transcription factors [BR:zju03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    107431005
DNA replication proteins [BR:zju03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    107431005
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     107431005
   MMR (mismatch excision repair)
     107431005
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     107431005
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon zf-CCHC DUF5521 zf-CCHC_3 CDC24_OB3 BRCA-2_OB1 DUF936
Other DBs
NCBI-GeneID: 107431005
NCBI-ProteinID: XP_015897369
UniProt: A0A6P4BEB7
Position
6:join(9219482..9219780,9220831..9223156)
AA seq 874 aa
METTTLTEGAIMKICRDEYPKGENWKPVLQILDVRMVNTQGGQPVAPEKERYRVVISDGA
YHQQGMLGTQNNDLVRQGRLQKGSLVRLKEFVCTPVQARLIIIIVDLDLILETCDLIGEP
EPAPKFVNTPPSGAVTGNPQSSVGNKPSGGQVNETVPATSVEQPRMNQSFGSAYSTNPNS
GRYAAPGTPSIYPKIEPGAGFPRPAPVGGSYSNQNMGFNNPRSEVSRPPQNSHVRAPYPS
YQQPPPMYSNRGPIAKNEAPARILPIAALNPYQGRWTIKARVTSKGELRHFNNPRGDGKV
FSFDLLDSEGGEIRVTCFNAVADQFYNQIEVGKIYMISRGSLKPAQKAFNHLHNDHEIFL
ESTSIVQPCYEDDNSIPRQQFHFHPISDVQEMDNNSVVDLIGVVSFINPASSIMRKNGTE
TQKRSLHLKDMSGRSVELTLWGNFCNAEGQRLQNMCDSGVFPVLAVKSGRVNDFNGKAVG
TISSSQLFINPDFPEAHRLKEWFDKEGRNAPSVSISREISTVGRTDMRKTISQIKDEKLG
TSEKPDWITVGATISFIKVDNFCYTACPLMIGDRQCNKKVTNNGDGKWRCDRCDQSIEEC
DYRYILQLQIQDHTGLTWVTAFQEGGEEVMGVSAKSLYYLKHEEQDDEKFAQIVRKVLFN
KFIFKLKIKEETFSDEQRVKSTVVKAERVNFSSESKFLLNLMDKLKAGNSSSSIPKVENI
IPNPGLNTNAPGNFGTRQPTPADFGNSVNAVREFGTPANQVGQYGNRYSSSGCPSIGSSG
MYLSCNSCGGTGHSSMNCPSIANSPGLSSGGGYGNRASSGPSFGNSSDECYKCHQTGHWA
RDCPGSSNIPPSYGSGSVVPGRYGGVPKQQVGGF
NT seq 2625 nt   +upstreamnt  +downstreamnt
atggagacgacgacgctgacggagggagcgataatgaagatatgcagggacgagtatccg
aaaggggagaactggaagccagtgttgcagatacttgatgtgaggatggtgaacacgcag
ggaggacaaccggttgctccagagaaggagaggtacagggtggtgatctccgatggggct
tatcatcagcaaggaatgctggggactcagaacaatgatctggtcaggcaaggaaggttg
cagaagggatcgcttgtccgcttgaaggagtttgtttgcactccagtacaagcccgccta
atcattattatagttgatctagatttgatacttgaaacatgtgatctcattggtgaacct
gagccagcaccgaaatttgtgaatacaccaccatcaggggcagttactggaaatccacaa
tcatctgttgggaataaaccttctggaggtcaggttaatgaaactgtgcctgcaacatct
gtagaacagcctagaatgaatcaatcatttggcagtgcttattctactaatcctaactcg
gggagatatgctgcaccaggtacaccgtccatttaccctaaaatagagcccggtgctggg
tttcctagaccggctccggtaggtgggtcatatagcaatcagaacatgggctttaataac
cctagatctgaggtttcaagaccgcctcaaaattctcatgtccgtgcaccttatccatca
tatcagcagccgcctccaatgtactctaacagaggaccaatagccaaaaatgaagctcct
gctaggattttaccaattgctgctctgaatccctatcagggaaggtggacaatcaaggct
agagtgacatcaaagggagaacttaggcactttaacaatcctcgtggtgatgggaaagta
ttttcttttgatcttcttgattctgagggtggggaaattcgggtgacctgctttaatgct
gtggctgatcaattttacaatcagattgaagttggtaagatttatatgatttcaagagga
agcttaaaaccagctcaaaaggctttcaaccacctccataatgatcatgaaatttttctg
gagagcacatcgatagtacagccatgctatgaggatgacaactctattccacggcagcag
tttcatttccatcctataagtgatgtacaagagatggacaacaatagtgttgtggattta
ataggtgtggtatcatttattaatcccgcttcttcaataatgagaaaaaatggtactgaa
actcaaaagagatcactccatttgaaggatatgtctggcagaagtgttgaattaactctg
tggggaaacttttgcaatgcagaaggacaaagactgcaaaatatgtgtgattctggggta
tttccagttctggctgtgaaatccggcagagtcaatgatttcaatgggaaggcagtggga
actatttcttcaagtcagctctttataaacccagattttccagaggctcacaggctgaag
gaatggtttgacaaggaaggtagaaatgccccatcagtatctatttccagggaaatatct
actgtgggtagaacagatatgcgaaagaccatatcccaaattaaagatgagaagttaggg
acttctgagaagccagattggataacagtaggtgcaaccatttcattcattaaggttgat
aatttctgctacacagcatgccctctcatgattggcgatcgacaatgtaacaaaaaggtt
acaaataatggagatggaaaatggcggtgtgatagatgtgatcaatccattgaagaatgt
gactacaggtatatactccaattacagatacaagaccacactggcttaacttgggtaact
gcatttcaggagggtggtgaggaagtaatgggtgtatctgcaaaaagtttgtattatttg
aaacatgaggagcaagatgatgagaaatttgcacaaattgttcgcaaggttctttttaac
aaattcatattcaagttgaaaattaaggaggaaacttttagtgatgaacaacgtgtgaag
tcaactgttgtcaaagcagaaagggtgaacttttcatcggagtctaaattccttttgaat
ttgatggacaagttgaaagcaggaaattcgagttcttctatcccaaaggttgaaaatatc
attccaaaccctggtttgaataccaatgctcctggaaattttggaactagacagccaaca
cctgctgactttggtaacagtgtcaatgcagttagagaatttggaacaccagcaaatcaa
gtgggtcagtatggaaaccgatattctagttcagggtgtccgtcaattggctcttctggt
atgtatctgagctgtaatagctgtgggggtactggtcatagctcgatgaactgcccaagt
atagcaaatagtccaggactatcatcgggagggggctatggaaatagagcatcatctggc
ccaagctttggtaattcttctgatgaatgctataaatgccatcaaacagggcattgggca
agagactgtccagggtcatctaatattcctccatcttatggaagcggcagtgttgttcct
ggaagatatggaggtgttccaaaacagcaagtcggtggcttttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (10)   
   Pfam (10)   
All databases (53)   

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