KEGG   Zea mays (maize): 100383056
Entry
100383056         CDS       T01088                                 
Name
(RefSeq) uncharacterized protein LOC100383056
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
zma  Zea mays (maize)
Pathway
zma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100383056
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zma03019]
    100383056
Messenger RNA biogenesis [BR:zma03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     100383056
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT
Other DBs
NCBI-GeneID: 100383056
NCBI-ProteinID: NP_001348870
Position
1:243941182..243960572
AA seq 901 aa
MEADEASAPPPPPWMQNKSAAAIEASSGPLSAAASRLSARSRALPSSRDFHFYNNFPAFK
SPVGAAAAKADASLGVLGGASILPTRQQPFPVGGDLDDAHDWLVALNDDLLERFGASTDE
FKTLRRKEETSGRRAAPQAGDGFQVVCGKKKKKVGDGGEERVGRVEAFGGFGSVRMVTKD
KAAAPGVKAKVPFHIRTIPRPQDVYCIVVDNSSKPFEHILLDRSEDGTRVVHPLEKLPVE
QIISRNVPDNEPVKPPALDNTPFTFVEDLKTLEVLATKLKDATEFAVDLEHNHYRSFQGL
TCLMQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYVC
NLFDTGQASKVLQMDRNSLEHLLHHFCGVAANKEYQAADWRLRPLPDEMIKYAREDTHYL
LYIYDLMRLRLVNGSSCENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENELNA
TQLSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMPVTSGKLKRMIKSRNSILER
NLNHVINNIRDAIAASGAFESIVEQLKKGKLEELTLADVKNSSEDTEMIPAVDVDNIEDP
SDESAVVPAVITNVGAAPCITSEASLGNMHLEDPVPKTKDSGASSGFTGLTDNKKLSNDQ
QQAAKATVQVSKRPTAFGALFGKAAAGRRPDLFLGFSNVQGKTKVDKITSSVVLPFHHFS
GGAKLSSAALPAKESLHSEPDSIQHSDPACQLEEVIQLDMGTDEQQPPENGNEDDGHCET
EDTEMSKSPSGDPSVTEQRFRSLNEERNVKQNQKTPREFEFSVPVVPFDYAEARKNLVSS
LPKAERRKDDAVARAINTDAGDKQRGSKKPPGGGENEGNFQHPRRRQAFPPSGNRNATYH
Q
NT seq 2706 nt   +upstreamnt  +downstreamnt
atggaagccgacgaggcctcggcgccgcctcccccgccgtggatgcagaacaagtcggcc
gcggccatcgaggcctcgtcgggcccgctttccgccgcggcctcccgcctctccgcccgc
tcccgtgcgctcccctcgtcccgcgacttccacttctacaacaacttcccggcattcaaa
tccccagtcggcgctgcggccgcgaaggccgacgcgtccctcggcgtgctcggcggggct
tcgattctcccgacgcggcagcagccgttccccgtgggcggcgacctcgacgacgcgcac
gactggctcgtcgccctcaacgacgacttgctcgagcggttcggcgcctccaccgacgag
ttcaagaccctgcggcggaaggaggagacttccgggcggagggcggcgccgcaggctggg
gacgggttccaagtggtgtgcgggaagaagaaaaagaaggtgggcgatggtggcgaggaa
cgcgtcggcagagttgaggctttcggaggttttggctctgtgaggatggtcaccaaggac
aaggcggccgcgccgggggtgaaggcgaaggtgcccttccacatccgcaccatcccaagg
ccccaggatgtgtattgtattgtggtggacaactccagcaagccgttcgagcatatcttg
cttgatcgcagcgaggatggcactcgggtcgtgcacccattggaaaaactccctgttgaa
caaataatcagcagaaatgttcctgataatgagccagttaagccaccggctttagacaac
actccttttacatttgttgaagacctgaaaaccttggaggtgctagccacaaagctgaag
gatgcaactgagtttgctgtcgatttggaacacaaccattataggtcgtttcagggtttg
acatgcttgatgcagatttcaacaagaacagaggactttattgttgacactcttaagctt
cgtaaatatcttggtgattatctaagagagtttttcagagatccaaccaagaaaaaggta
atgcatggtgcaggtcgtgatataatatggcttcaacgagacttcagcatatatgtgtgc
aacctttttgacacaggccaggcttcaaaggtcttacagatggaccgcaacagcttggaa
catcttttgcaccatttctgtggagtagctgcaaataaagaataccaagctgcagattgg
agattgaggccccttcctgatgaaatgatcaaatatgctagagaggatacacactatctg
ctatatatatatgacctgatgagattgagactagtgaatgggtcatcatgtgaaaatgat
cttcttttagaggtttgcaagcgcagcaacgaaatttgcttgcaactgtatgagaaggag
cagctgactgatacatcatatctacatatacatgggttgaaagaaaacgagctgaatgca
acgcagctgtcagttctttccagtctatatcgatggagagatggcattgcccgtgctgag
gatgagagcactggctatatattacccaataagactctacttgagatagcaaaggagatg
cctgtgacaagtgggaagttgaaaagaatgattaaatcaagaaattcgattttggaacga
aatctcaaccatgttattaacaatataagggatgccatagcagcttctggtgcttttgaa
agtatagtggagcagctgaagaagggaaaactggaagagttaacattggcagatgtgaag
aacagcagtgaggacactgaaatgattcctgctgttgatgttgataacattgaagatccg
agtgatgaatctgctgtagttcctgcagtgattacaaatgtcggtgctgctccctgtatt
acaagcgaagcttccttgggtaatatgcatttagaggaccctgtgcctaaaacaaaggac
tcgggtgcttcatcagggtttactggactgacagacaacaaaaagctgagcaatgaccag
cagcaagcagcaaaggctactgttcaagtatcaaagaggcctacagcttttggagctctg
tttggaaaggcagctgctggaagaaggccagatcttttcctaggattttcaaatgttcag
ggtaagactaaggtggacaagataacgtcttccgtggtacttccttttcatcatttctca
ggtggtgcaaaactttcatcagccgcccttccagcgaaagaatcgttgcattctgaacca
gacagcatccaacacagtgatccagcttgtcagttggaagaagtgatacagttggacatg
ggaacagacgagcaacaaccaccagaaaatggcaacgaggatgatggacactgtgagact
gaagacacggagatgtcaaagtccccttcaggtgacccgtctgttaccgagcaacgattc
cgatcactcaacgaagaaagaaacgttaagcagaaccagaagacacctcgagaattcgaa
tttagtgttccggtggtgccttttgattatgccgaagccagaaagaatctcgtgtctagt
ttgcctaaagctgagaggagaaaggacgatgccgttgccagggctataaatacagacgct
ggagataagcagaggggttcaaaaaagccaccaggtgggggagagaacgagggaaatttc
cagcatccacgaagacggcaggctttcccgccttcaggcaatagaaatgctacgtatcac
cagtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (10)   
   RefSeq(nuc) (2)   
   GenBank (4)   
   EMBL (4)   
Protein domain (3)   
   Pfam (3)   
All databases (23)   

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