KEGG   Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023: A265_00560
Entry
A265_00560        CDS       T03385                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
zmc  Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023
Pathway
zmc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:zmc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A265_00560 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zmc03021]
    A265_00560 (rpoB)
   03400 DNA repair and recombination proteins [BR:zmc03400]
    A265_00560 (rpoB)
Enzymes [BR:zmc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A265_00560 (rpoB)
Transcription machinery [BR:zmc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A265_00560 (rpoB)
DNA repair and recombination proteins [BR:zmc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A265_00560 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AHJ72040
Position
complement(644634..648839)
AA seq 1401 aa
MGRLVVKREDYMATKASAIGHASVKKRIRKMFGNIHEVVDMPNLIEVQRDSYENFLRSRP
EDGYVSGLEKTLRSVFPIRDFGGVAELDFVQYELEEPKFDVDECRQRGITYAAPMRVTLR
LIVFEVDPDTETRSVLDIKEQDVYMGDMPLMTRNGTFFINGTERVIVSQMHRSPGVLFDH
DKGKTHSSGKFLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNAEQ
ILHHFYNTITFVRGDGGWKVPYVAESWRGRKPFFDIINGDTGEVVFPAGQKISPRAANKA
GRDGLETLLIPTEEIYGHYAAYDVIDESTGRIWIEAGDEVTPENLELLDNAGVATLELLD
IDHVSTGPWIRNTLKADKAEDRDHALAEIYRVMRPGEPPTKETAEALFYGLFFDPERYDL
SAVGRVKLNMRLDLDCPDTVTTLRAEDILAVVKTLVDLKDGKGEVDDIDNLGNRRVRSVG
ELLENQYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQ
TNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLAT
FSRINKYGFIETPYRKVVDHKVTNEVIYLSAMEESRYTVAQANAELDAEGHFVEELVSAR
EAGEFLMAPREQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEA
PFVGTGMEETVARDSGAAISARRAGIVDQVDASRIVIRTTGEIEAGKPGVDIYRLMKFQR
SNQSTCINQRPLVSVGDYVNAGDVLADGPSTELGELALGRNVLVAFMPWNGYNYEDSILI
SERIVKDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEDALRNLDEAGIVYIGAEVQ
PGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHG
VDKDERAMAIEREEIERLTKDREDERAILNRATYAQLQEKLLGQTVAAAPYKHIVKGARI
DIETLASVEPHKWFKFAVEDDARQAELEAIKNQYDSADEAIRKRFEDRVEKAQRGDELPP
GVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPAEDMPFLADGTPVDIVLNPLGVP
SRMNIGQIFETHLGWAARGLGAKVRTALEEWREANADRYEWDFSPPEVVRERMIEVYGEK
YAEDIKSREDREIVEMAGLLRNGVPMATPVFDGAKPEDISEMLNLAGLDDSGQVELYDGR
TGEQFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMHSLGLN
VELKTSKAKDEDDSSFQVAAE
NT seq 4206 nt   +upstreamnt  +downstreamnt
atggggcggctggttgtgaagcgtgaggattatatggcgaccaaggcatctgctatcggc
cacgcgagtgtaaaaaaacgtattcgcaaaatgtttggtaatatccatgaagttgtggat
atgccgaaccttatcgaagttcagcgtgatagttacgaaaactttctgcgttctcgccct
gaggacggatatgtttcagggttggaaaaaactctgcgttctgtttttccgatccgtgat
ttcggcggtgtagcagaactggattttgtccagtatgagttggaagaaccaaagtttgac
gtcgatgaatgccgtcagcggggcattacctatgcggctccgatgcgggttaccttgcgt
ctgatcgtatttgaagttgatcctgacacggaaacgcgttctgttctcgatattaaagag
caggatgtctatatgggcgacatgccgctcatgacgcggaacggcaccttctttatcaat
ggtaccgagcgcgttatcgtcagccagatgcaccgtagtccgggtgttctgtttgaccat
gataaaggcaaaacccattcctccggtaaattcctgtttgccgcgcgcgttattccttat
cgtggttcatggttggatttcgaatttgacgcgaaagatatcgtcaatgttcgtatcgac
cgtaaacgcaaattaccggtcacgaccctgctttatgctttgggtttgaatgccgaacaa
atcctgcaccatttctataacacgatcacttttgtgcgtggtgatggcggctggaaagtg
ccttatgtcgctgaaagctggcgtgggcggaagccattctttgacatcatcaatggcgat
accggtgaggtcgttttccctgccggacagaagatttcgccccgcgctgccaataaggct
ggccgcgatggtttggaaaccttgctgattccgactgaagaaatctacggtcattatgcc
gcttatgatgttatcgacgaatcaacgggtcgcatctggattgaagcgggcgacgaagta
acgccagaaaatctggaattgctggataatgccggtgtcgcaacgcttgagttgttggat
atcgaccatgtttccaccggtccttggatccgtaacactttgaaagccgataaagctgaa
gatcgcgatcatgctttggctgaaatctatcgggtaatgcgtcctggtgagccgccaacg
aaggaaaccgcagaagcgcttttctatggcttgttctttgatccagaacgctatgacctt
tcggctgtcggtcgcgtcaagctgaatatgcgccttgatctcgattgtcctgatacggtt
acgaccttgcgagcagaagatattctggccgttgtgaaaacgctggtcgatctgaaagac
ggcaagggcgaagtcgatgatatcgataaccttggtaaccgtcgcgtccgttcagtcggt
gagctgttagaaaatcagtatcgtgttggtctgttgcggatggaacgcgctgttaaagag
cgtatgtcctctgttgacgtttcgaccgtcatgccaaatgatctgatcaacgccaaaccg
gcggtggctgcggttcgcgaattcttcggttcttcgcagctgtcccagtttatggatcag
accaatcccctttccgaagtcacgcataagcgtcgtgtttcggctttgggcccgggtggt
cttacccgtgagcgtgcaggctttgaagtccgagatgtccatccgacccattatggtcgt
atctgcccaattgaaacgcctgaaggcccgaatattggtctgattaactctcttgctacc
tttagccgtattaacaaatacggttttatcgaaacgccttatcgtaaggttgtcgatcac
aaggtaacaaatgaagttatctacctctctgcgatggaagaaagccgctatacggtggct
caggccaacgcagaattggacgcagaaggtcatttcgtcgaagaactggtttctgctcgt
gaagccggtgaatttttgatggcacctcgcgaacagatcactttgatggacgttagcccg
aaacagttggtttcggtcgctgcctccttgatcccgttccttgaaaacgatgacgctaac
cgcgctttgatgggttccaacatgcaacgtcaggccgtgcctttggtacgtgctgaagcg
ccgtttgttggcaccggtatggaagaaacggttgctcgcgattctggagccgcgatttcg
gcacgccgtgctggtattgtcgatcaggtcgatgcttctcgtattgttatccgcaccacg
ggtgaaatcgaagccggtaaacccggtgtcgatatttatcgcttgatgaaattccagcgt
tctaaccagtcaacctgcattaaccagcgtccgttggtcagcgtcggtgactatgtgaat
gccggtgacgttttggctgatggcccgtctacggaattgggtgaactggcattggggcgg
aacgtactcgtcgcctttatgccgtggaatggttacaactacgaagattccatcctgatt
tccgaacggattgttaaagacgacgtctttacctcgattcatattgatgaattcgaagtg
atggctcgtgataccaagctggggccggaagatatcacgcgtgatattccgaatgttggt
gaggatgctctccgcaatttggatgaagcgggtatcgtttatatcggtgcagaagttcag
ccgggcgatattttggtcggtaagatcacgccaaagggcgaaagcccgatgacgccggaa
gaaaagttgttgcgggcgatctttggtgaaaaagcctcggatgttcgtgatacctctttg
cgtctgcctccgggtgttgctgggacgattgttgatgttcgtgtctttaaccgtcatggt
gtcgacaaagacgaacgcgccatggctattgagcgcgaagaaatcgagcgtctgacgaaa
gaccgtgaagacgagcgggctattctgaatcgggcaacctatgctcagcttcaggaaaaa
ctgcttggtcagacggtagctgctgcgccttataagcatatcgttaagggtgccagaatc
gatatcgagacgctggcttctgtcgaaccgcataaatggttcaaattcgctgttgaagat
gatgcccgccaggcagaattggaagcgatcaagaaccagtatgacagtgcagatgaagct
attcggaagcgctttgaagatcgcgttgaaaaagcacagcgtggtgacgagttaccgcca
ggcgtcttgaaaatggtcaaggtctttgttgccgtgaagcgtaagcttcagccgggtgat
aagatggccggtcgtcatggtaacaagggtgttatcagtcgtattctgcctgccgaagac
atgccgttccttgctgatggaacgccggttgatatcgttctgaacccgttaggtgtgcct
agccgtatgaatatcggacagatattcgagacgcatttaggttgggctgcgcgtggtctt
ggggcgaaagtccggacagctttggaagaatggcgcgaagctaatgccgaccgctatgaa
tgggatttctcaccaccagaagttgtcagagaacggatgattgaagtctatggcgaaaaa
tatgccgaagacatcaaaagccgtgaagacagagaaatcgtcgaaatggcgggtctgtta
agaaatggtgtgccgatggcaacgccagtctttgatggtgccaagccggaagatatttct
gaaatgctgaatttggctggtctggatgactctggacaggttgaattatatgatggacgg
acgggtgaacaattcgaccggaaggtgactgtcggctatatttatatgctgaaattgcac
catttggttgatgacaaaatccatgctcgttccatcggcccctacagtcttgtcacccag
cagccgttgggcggtaaagcacagttcggtggtcagcgctttggtgaaatggaagtctgg
gcattgcaggcttatggtgctgcttataccttgcaggaaatgttgaccgttaagtcagat
gacgttgtcggtcgtaccaaggtttacgaagctatcgtcaagggtgatgatactttcgag
gccggtattcctgaaagcttcaacgtgcttgtcaaggaaatgcatagtctgggtctgaat
gtcgagctgaaaacctccaaggcaaaagacgaagacgatagcagttttcaggtagccgct
gaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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