KEGG   PATHWAY: mmu04136
Entry
mmu04136                    Pathway                                
Name
Autophagy - other - Mus musculus (house mouse)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
mmu04136  Autophagy - other
mmu04136

Other DBs
GO: 0006914
Organism
Mus musculus (house mouse) [GN:mmu]
Gene
11793  Atg5; autophagy related 5 [KO:K08339]
18518  Igbp1; immunoglobulin (CD79A) binding protein 1 [KO:K17606]
19052  Ppp2ca; protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform [KO:K04382] [EC:3.1.3.16]
19053  Ppp2cb; protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform [KO:K04382] [EC:3.1.3.16]
213948  Atg9b; autophagy related 9B [KO:K17907]
225326  Pik3c3; phosphatidylinositol 3-kinase catalytic subunit type 3 [KO:K00914] [EC:2.7.1.137]
235040  Atg4d; autophagy related 4D, cysteine peptidase [KO:K08342] [EC:3.4.22.-]
242557  Atg4c; autophagy related 4C, cysteine peptidase [KO:K08342] [EC:3.4.22.-]
245860  Atg9a; autophagy related 9A [KO:K17907]
29869  Ulk2; unc-51 like kinase 2 [KO:K08269] [EC:2.7.11.1]
329015  Atg2a; autophagy related 2A [KO:K17906]
50540  Igbp1b; immunoglobulin (CD79A) binding protein 1b [KO:K17606]
51897  Atg13; autophagy related 13 [KO:K08331]
52639  Wipi1; WD repeat domain, phosphoinositide interacting 1 [KO:K17908]
56208  Becn1; beclin 1, autophagy related [KO:K08334]
56486  Gabarap; gamma-aminobutyric acid receptor associated protein [KO:K08341]
56716  Mlst8; MTOR associated protein, LST8 homolog (S. cerevisiae) [KO:K08266]
56717  Mtor; mechanistic target of rapamycin kinase [KO:K07203] [EC:2.7.11.1]
57436  Gabarapl1; GABA type A receptor associated protein like 1 [KO:K08341]
66615  Atg4b; autophagy related 4B, cysteine peptidase [KO:K08342] [EC:3.4.22.-]
666468  Atg4a; autophagy related 4A, cysteine peptidase [KO:K08342] [EC:3.4.22.-]
66795  Atg10; autophagy related 10 [KO:K17888]
67526  Atg12; autophagy related 12 [KO:K08336]
67841  Atg3; autophagy related 3 [KO:K08343]
68118  Atg101; autophagy related 101 [KO:K19730]
74244  Atg7; autophagy related 7 [KO:K08337]
74370  Rptor; regulatory associated protein of MTOR, complex 1 [KO:K07204]
74781  Wipi2; WD repeat domain, phosphoinositide interacting 2 [KO:K17908]
75669  Pik3r4; phosphoinositide-3-kinase regulatory subunit 4 [KO:K08333] [EC:2.7.11.1]
76559  Atg2b; autophagy related 2B [KO:K17906]
77040  Atg16l1; autophagy related 16 like 1 [KO:K17890]
93739  Gabarapl2; GABA type A receptor associated protein like 2 [KO:K08341]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   

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