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LinkDB: database of link information

DBGET LinkDB KEGG2

Search links from in format

(Note) Specify a single entry or multiple entries in the form of db:entry, such as hsa:126 hsa:127

Links are categorized into the following 4 types.

original links are extracted from the database entries provided by the GenomeNet DBGET system.

reverse links are derived from the original links by exchanging a source entry and its target entry.

equivalent links are special original links to signify equivalent contents between KEGG GENES, COMPOUND, DRUG, REACTION databases and databases other than KEGG.

indirect links are derived by combining two or more original links. Currently, links from KEGG GENES to REACTION via KO, and to COMPOUND via REACTION are available.

LinkDB information

Release 13-05-19, May 13
Kyoto University Bioinformatics Center
2,339,256,068 entries

Database and link statistics

DBGET databases
Link-only databases

URI prefixes

linkmap
Download link information from to in format

Download equivalent link information for a selected organism

for in format

Download equivalent link information for COMPOUND, DRUG and REACTION

for in format

LinkDB API

A REST-like API for LinkDB search is available via:

http://rest.genome.jp/link/<arguments with options>

Example: http://rest.genome.jp/link/hsa:126 or
  http://rest.genome.jp/link/hsa:126+-e for only equivalent links

Last updated: March 7, 2013
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pubmed biosystems umbbd tc cog cazy tax smart go litdb prosdoc prosite pfam prodom blocks prints epd refseq uniprot prf pdbstr pdb interpro ensembl insdc ncbi-gene unigene hgnc brite genome genes bioproject 50genomes nagahama ipi scop brenda explorenz iubmb expasy pathway module orthology oc expression environ reaction enzyme rpair disease drug compound glycan rclass pmd aaindex carbbank omim ligandbox drugbank knapsack lipidbank lipidmaps pubchem chebi pdb-ccd 3dmet medlineplus atc dailymed sider hsdb hmdb massbank nikkaji glycoepitope glycomedb jcggdb umbbd-rn sabio-rk