About Bac2Feature: References
Papers of Bac2Feature and the dependencies are below.
If you use Bac2Feature in your projects, please cite the following papers:
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Bac2Feature paper:
Fujiyoshi, M., Suzuki, T. K., Iwasaki, W., Furusawa, C., & Matsui, M. (2025). Bac2Feature: an easy-to-use interface to predict prokaryotic traits from 16S rRNA gene sequences. Bioinformatics Advances, vbaf136. -
Prokaryotic trait data:
Madin, J. S., Nielsen, D. A., Brbic, M., et al. (2020). A synthesis of bacterial and archaeal phenotypic trait data. Scientific Data, 7, 170. -
PICRUSt2 pipeline:
Douglas, G. M., Maffei, V. J., Zaneveld, J. R., Yurgel, S. N., Brown, J. R., Taylor, C. M., Huttenhower, C., & Langille, M. G. I. (2020). PICRUSt2 for prediction of metagenome functions. Nature Biotechnology, 38, 685-688.