KEGG   Alcaligenes faecalis JQ135: AFA_07540
Entry
AFA_07540         CDS       T05446                                 
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
afq  Alcaligenes faecalis JQ135
Pathway
afq03420  Nucleotide excision repair
afq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:afq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AFA_07540
   03430 Mismatch repair
    AFA_07540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:afq03400]
    AFA_07540
Enzymes [BR:afq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AFA_07540
DNA repair and recombination proteins [BR:afq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AFA_07540
   MMR (mismatch excision repair)
    Other MMR factors
     AFA_07540
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PcrA_UvrD_tudor AAA_12 AAA_30 Viral_helicase1
Other DBs
NCBI-ProteinID: ASR89306
UniProt: A0A9N7DMN3
Position
1620708..1623002
AA seq 764 aa
MMDRLNPEQRAAVTLPSGHALVLAGAGSGKTSVLTSRMAWLIQTGQVSPHGLAAVTFTNK
AAREMLTRLTSLLPIDTRGMWVGTFHGLCNRLLRMHYRDAGLVQTFQILDTADQLASIKR
MVKANNVDDEKFPPKEIQKFINACKEDGQRPGDLEAHDPHRRRLIELYQLYQEQCEREGV
VDFGELLLRAYELLSRNAPIREHYQRRFKHILVDEFQDTNVLQYRWLRLLAGDQACMFAV
GDDDQSIYAFRGANVGNMADFERDYARGNVIRLEQNYRSCGHILDSANALIENNSGRLGK
NLWTDSGEGELVRISELASDALEAQWIVDEVRALIAEGKPRREIAILYRSNAQSRVIEHR
LFSQGLPYKVYGGHRFFERQEIKHVLAYLRLMDNADDDTAFLRVVNFPTRGIGARSVEQL
ADLARERGTSLLRAIPYLQGRAAASLMRFSNLIQDMASQAQILSLPELIEHVVHDSTLLA
HYQADREGAERLENLQELVNAATVFVGEEGFAELPAGRVPEAVAGESEQAMQNPDQPAAS
VLAPMSPLGSFLTHASLEAGDNQAQAGQDAIQLMTIHAAKGLEFDAVFITGLEEGLFPHE
NSLFDPGGIEEERRLMYVAITRARQRLYITLAQSRMLHGQTRYAMRSRFLEELPEQHIKW
LSARYTSPPMQSEASSGAFRRGQSWESKDKSYSAQPYGGRSHTSVLEVNGQTFRVGQGVH
HNRFGDGTIVNLTGQGDDAQALIQFREVGSKTLALAIAKLDPVS
NT seq 2295 nt   +upstreamnt  +downstreamnt
atgatggatcgcttaaacccggaacagcgagccgccgttactctcccctctggccatgcc
ctggtgctggccggagcgggtagcggaaaaaccagtgtcctgacctcccgaatggcctgg
ttaatccagactgggcaggtcagccctcacggactggccgctgttaccttcaccaacaaa
gccgcgcgcgaaatgctgacgcggcttacttctttattgcctatcgatactcgcggaatg
tgggtcgggacctttcacggcctgtgtaatcgcttgctgcgcatgcattaccgcgatgcc
ggtctggtacagacgttccagattctggatacggcagatcagttggcctccatcaagcgc
atggtcaaggccaacaatgtggatgatgagaaatttccgcccaaggaaattcagaagttc
atcaacgcctgtaaagaagacggccaacgtcctggcgacctggaagctcatgaccctcac
cgccgccgcctgatcgagctttaccagctttatcaagagcagtgcgaacgtgaaggtgtg
gtggactttggcgagctactgctgcgcgcttacgagctgctgtctcgcaatgcaccaatc
cgcgagcattatcagcgccgcttcaaacacattctggtggacgagttccaggacaccaac
gtgctgcagtatcgctggttgcgtcttttggccggtgatcaggcctgcatgtttgccgtg
ggcgacgatgaccagtcgatctatgctttccgtggcgcgaacgtgggcaatatggccgac
ttcgagcgcgactatgcccgtggcaatgtgatccgcctggagcagaattatcgttcctgc
ggtcatattctggattccgccaacgcgctgatcgagaacaatagtggtcgcctgggcaag
aatctgtggaccgatagcggcgaaggcgagctggtacgcatcagcgaactggcttcggat
gccctggaagcacagtggattgtggatgaagtccgcgccctgattgctgaaggcaagcca
cgtcgtgaaattgccattctgtatcgcagcaacgcccagtcccgagtgattgagcacagg
ctgttttcccaaggtttgccctacaaagtgtatggcggccaccgtttcttcgagcgtcag
gaaatcaagcacgtgctggcttacttgcgcctgatggataacgcggatgatgacaccgct
tttctgcgcgtcgtgaatttcccgactcgcggaattggtgcccgttcggtagagcaactg
gccgatttggcgcgcgagcgcggtaccagtttgctgcgtgccatcccttatctgcaagga
cgtgcggctgccagcttgatgcgtttctcgaacctgattcaggatatggccagccaggcg
cagatcttgtctttgcccgagctgattgaacacgttgttcacgacagtaccttgctggcc
cattatcaggccgaccgcgaaggtgccgaacgcctggaaaacttgcaggagttagtcaac
gcggccacggtttttgtgggtgaagaaggctttgccgagctgcctgcaggtcgagtgcct
gaagccgtggcgggcgagtccgagcaggccatgcaaaatccagatcagccggctgcctct
gtgctggcccccatgtcgccgttgggctccttcctgacccatgcatctttggaagcaggg
gacaatcaggcccaggcaggccaggatgccattcaactgatgacgatccatgccgccaaa
ggtctggagttcgatgcggttttcattactggcctggaagaggggttgttcccgcatgag
aacagcttgttcgatccgggcggtatcgaggaagagcgtcgcttgatgtacgtggcgatt
acgcgggcgcgtcagcgtctatacatcaccttggcgcaaagccgcatgttgcacggccag
acgcgttacgccatgcgttcgcgctttctggaagagttgccggagcaacatatcaagtgg
ttgtcggcccgctacactagcccgcccatgcaatccgaggctagctcgggggcatttcgt
cgcggtcaaagctgggagtccaaagacaagagctattcggcccagccttacggcggtcgt
agccacaccagtgtgctggaagtgaatgggcagacgttccgtgtggggcagggagtgcat
cacaaccgttttggtgacggcaccatcgttaatctgacggggcagggtgacgacgcccag
gccttgattcagttccgtgaagttggtagcaagactctggccttggccatcgccaagctg
gatcctgttagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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