KEGG   Arabidopsis lyrata (lyrate rockcress): 9307230
Entry
9307230           CDS       T01578                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
  KO
K14809  ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:aly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:aly03009]
    9307230
Enzymes [BR:aly01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     9307230
Ribosome biogenesis [BR:aly03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    9307230
SSDB
Motif
Pfam: DEAD Helicase_C DUF4217 ResIII
Other DBs
NCBI-GeneID: 9307230
NCBI-ProteinID: XP_002871160
UniProt: D7LYE5
Position
Unknown
AA seq 593 aa
MDSSANINKALTETRFSDLEPPLSGNIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDA
ATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSSQIYNVAQPFVSTLANV
NSVLLVGGREVKADMKIIEEEGCNLLIGTPGRLSDIMERMEILDFRNLEILILDEADRLL
EMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQF
TNSKTPSGLHLEYIECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPAL
KSISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPN
MFNHRAGRTARLGRLGKAIVFLLPKEEAYVEFMRIRRVPLEERKCSEDASDVIPIIRSAA
MKDRAVLEKGLKAFVSFVRAYKEHHCYFIFRWKELEIGKLAMGYGLLYLPSMSEVKQHRL
SSEGFTPVEGVKFDEIKFKDKSREKQRQQNLQVRKEKRQEEKREKGKRKRVDAPTTNDPK
KASRKLTGKQRQTIQTAEDEEVMDRDYKLMIKVKKGLIKEDEYERLTGDDDLF
NT seq 1782 nt   +upstreamnt  +downstreamnt
atggattcatcggcgaacataaacaaagctttaacggagacgcgtttctcggacctcgaa
cctcctctctccggaaatatcattgaggcgcttaatcagtctgatttcgagttctgcact
ccggttcaagccgcgacgattcctttactctgtagttacaaggatgttgccgtcgacgct
gccaccggttctggaaaaaccctagctttcgtcgtccccctcgtcgaaatcctccgtcga
tccacttcattccctccgaagcctcatcaggtcatgggggtgattatatcgccaacaaga
gagctatcgtcgcagatatataatgtggcacagccatttgtttcgactttggcaaatgtg
aactctgtgttacttgttggaggccgagaggtgaaagctgacatgaagattattgaagaa
gaaggatgcaatcttttgattggtacacctggaaggctttcagatataatggaacgaatg
gagattctcgattttcgaaatcttgagattcttattttagacgaggctgataggcttttg
gagatggggttccaaaggcaggtgaattacattatctcacgcttgccaaagcagaggagg
actggcctcttttcagctactcaaacagaaggcgttgaagagctcgccaaggctgggctt
aggaaccctgtgagagttgaagttcgagctaagtccaagtccgaatcatcccagcaattt
acaaactcgaaaaccccttctggtcttcatcttgagtatatcgaatgcgaagcagataag
aaatcatcacaactagtggatctcctcatcaagaacagtgataaaaagcttatagtattc
ttcatgacctgtgcttctgttgactactggggactcgtactttcaaaaattcctgccctg
aagtctatatctttaattcctatccatggggatatgaagcagaatgcaagagataaggca
ttagcttcatttactaaagcatcaagcggtgcccttctgtgcacagacgtcgctgcacgt
ggacttgatattccaggcattgattatgtagttcagtatgatcccccacaagacccaaat
atgttcaaccacagggccggcagaactgcaagattgggaagactagggaaggcaattgtg
tttttactgcctaaggaggaagcctatgtagagtttatgcgcataagaagagtccctctg
gaagagagaaaatgctctgaggacgcatccgatgtcatcccgattatacgttcagctgcc
atgaaggaccgagcagtgttggagaagggattaaaggcatttgtttcctttgtccgtgct
tataaggagcatcactgctatttcattttcagatggaaagaacttgaaattggaaagtta
gccatgggatatggcctcttgtatcttccttcaatgtctgaagttaaacaacacagactt
tccagtgagggtttcacacccgttgaaggtgtcaagtttgacgaaataaaattcaaggac
aaatctcgggagaaacaaagacagcaaaacttacaagtaaggaaagagaaacggcaagaa
gagaaaagagagaaaggcaagagaaaaagggttgatgctcctactactaatgatcctaag
aaagcgtcgagaaagttaacagggaagcaaagacaaactattcaaactgctgaagatgaa
gaagtgatggatcgagattataagttaatgataaaagtaaagaaagggttaattaaagaa
gatgaatacgaaagacttacaggagatgatgatttattctga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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