KEGG   Alteromonas mediterranea UM4b: I636_09795
Entry
I636_09795        CDS       T02723                                 
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
amad  Alteromonas mediterranea UM4b
Pathway
amad03030  DNA replication
amad03410  Base excision repair
amad03420  Nucleotide excision repair
amad03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:amad00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    I636_09795
   03410 Base excision repair
    I636_09795
   03420 Nucleotide excision repair
    I636_09795
   03430 Mismatch repair
    I636_09795
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amad03032]
    I636_09795
   03400 DNA repair and recombination proteins [BR:amad03400]
    I636_09795
Enzymes [BR:amad01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     I636_09795
DNA replication proteins [BR:amad03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     I636_09795
DNA repair and recombination proteins [BR:amad03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     I636_09795
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     I636_09795
   MMR (mismatch excision repair)
    DNA ligase
     I636_09795
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      I636_09795
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH 5_3_exonuc RNA_ligase DZR_2
Other DBs
NCBI-ProteinID: AGQ01811
Position
2183256..2185292
AA seq 678 aa
MSDTLEQARKKVAELRNTLNEYNYQYYVLDDPSIPDAVYDRDMQSLIALEKQYPSLQSPN
SPSQKVGGEALSAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRLKDTSSLHFSCEPKL
DGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVPLRLRGDAHPDRVEVRGEVFM
PREGFAKLNEHQKNAGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPDNFT
LPTTHSERLSQLGKWGLPLCPDIDTAEGGRGCLDYYHHILEKRDNLPYDIDGVVFKVNRI
DLQAALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVS
NATLHNQDEITRLGVKVGDTVVIRRAGDVIPQVVSVVDTKRTGSENDIAFPSQCPVCGSQ
VEKLEDEAVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADF
FTLSLGDVVGLERMAEKSASKLLSSLEASKQTTLAKFLYALGIREVGEATAANLAAHFET
LDAIRDASIEALVEVQDVGEIVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDADNL
PLEGKTCVITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELD
VEVWDEAKLIAFLAENEK
NT seq 2037 nt   +upstreamnt  +downstreamnt
atgtctgacactttagaacaagctcgaaaaaaagttgccgaactgcgcaacaccttaaac
gaatataactaccagtattatgtattggacgatccctcaatacccgacgcggtatacgat
agggatatgcagtcacttattgcgcttgaaaaacagtatccttctttacaaagccctaat
tccccaagtcaaaaagtggggggggaggcattatcggcatttgagcaagtcacccacgat
gtgcctatgctttcgcttgataatgctttcgatgaggaatctcttcttgcttttgaaaag
cgtctcaaggatagattaaaagacacatcaagtttgcatttcagttgcgagcctaagtta
gatggccttgccgtaagtatcctttatgagaatggtgaacttgttcgtgcggccacacga
ggtgatggtcaagtcggtgagaatattacggcgaatgtacgcactatttctaacgtgccg
ttaaggttgcgcggagacgctcaccccgatcgcgtagaagttcgcggtgaagtattcatg
cctcgcgagggctttgctaagttaaacgaacatcagaaaaacgccggtggtaaggtgttt
gccaatccacggaatgccgcagcgggaagtttacgtcagcttgattcaaaaataaccgct
aaacgcccgttgatgttttatgcatactcgctgggcgtagtacaacctgataactttacg
ctacctaccacccatagcgaacgcctctcacaattaggtaaatgggggctgcccttgtgc
cccgatattgatacagctgaaggtgggcgaggctgtctcgattactatcatcatatatta
gaaaagcgtgacaacttaccttacgacatagacggcgttgtctttaaagttaaccgtatt
gatttacaggctgcgctagggtttgtagcacgtgcgccaaggtgggcaattgcacaaaag
tttcctgcccaagaagaagtgactaaactgcttgatgtagagtttcaggttggccgtacc
ggtgcaattacccctgtcgcaaggcttgagcccgtttttgtaggcggtgtaaccgtgtca
aatgcgaccttgcacaaccaagatgagattactcgtttaggcgttaaagtgggtgacact
gtggttatccgtcgtgcaggtgatgttattccgcaggtggtgtctgtggttgatacaaaa
cgtacaggcagcgaaaacgacatagcttttcccagtcagtgccctgtgtgcggctcacaa
gtagaaaagcttgaagatgaggcagttgctcgttgtacgggtgggttaatctgtgcagcg
cagcgcaaacaagcgcttaaacattttgcttctcgaaaggcatttgatattgacggttta
ggggacaaattggtcgatcagctagttgatgccgatttagttcatagccctgctgacttc
tttactctatcacttggtgatgtggttggtttagagcgcatggctgaaaaatcagcgagt
aagttgttatcctctttagaggcatctaaacaaactaccttagcgaagtttctatacgca
cttggtattcgagaagtaggggaagcgacagcagctaatttagcggcgcactttgaaacc
ctcgatgcaattcgcgacgcgtcgatagaggcgctggttgaagtacaggatgtgggcgag
atagtagcaacacatatatttaacttctttaatgagtcacacaatactgatgtgattgat
gcgttgttaaaagaaggcattaactggcctgcgattgaaaaacctgacgcggataactta
ccgcttgagggtaaaacctgtgtgatcaccggaacgcttagcgaaatgggccgctcggat
gctaaagcgcgcttacaactcttaggggctaaagtggcgggttcggtaagtaaaaatacc
gattttctggttgctggagaaaaggcaggctctaaattgacgaaggcccaagagttagac
gttgaggtgtgggatgaagccaaacttattgcttttctcgcagaaaatgagaaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (30)   

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