KEGG   Alteromonas mediterranea U4: I607_00265
Entry
I607_00265        CDS       T02720                                 
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
amal  Alteromonas mediterranea U4
Pathway
amal03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:amal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    I607_00265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amal03400]
    I607_00265
Enzymes [BR:amal01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     I607_00265
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     I607_00265
DNA repair and recombination proteins [BR:amal03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     I607_00265
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS NFACT_N NUFIP1
Other DBs
NCBI-ProteinID: AGP83865
Position
62142..62951
AA seq 269 aa
MPELPEVEVSRLGVSPHLIGNTITRVVVRERRMRWPIPQEVAKVEGQKATAVKRRAKYLL
IETAQGTLILHLGMSGKLRVIDASTPVIKHDHVDIVLSTGKCLRFNDPRRFGAVLYQAPD
THIPMLDNLGPEPLTDDFNDTRLFTLSRNRKGPVKNFIMDNAIVVGVGNIYANEALFLAG
IDPRRAAGNISAARYKLLTATIKQVLAKAIEQGGTTLKDFAQTDGKPGYFAQHLNVYGRK
GEPCEACGKAIESKVIGQRNTFFCTRCQR
NT seq 810 nt   +upstreamnt  +downstreamnt
atgcctgaattacccgaagttgaagtaagccgtttgggcgtctcaccacatcttattggc
aacacgattacccgtgttgtggttcgcgagcgaagaatgcgttggcctattccacaagag
gtggccaaggttgaggggcaaaaggccacggccgtaaagcgccgcgctaaatatctattg
attgagacagcgcagggtacgctaattttacacttgggcatgtcgggtaaactacgggtt
atcgacgcttctaccccagtgattaagcacgaccatgttgacatcgtgcttagcacgggt
aaatgtctgcgctttaacgaccctagacgcttcggtgccgtgctgtatcaagcgccagat
acacacattcccatgcttgataatcttgggcctgagccccttacagacgattttaacgat
acgcgcttatttaccctgtcacgcaaccgcaaaggcccagtgaaaaacttcattatggat
aatgctattgtggtgggggttggaaatatctatgcaaacgaagcgctatttttagcgggt
atcgatccaaggcgcgccgccggtaatatcagtgcagcccgctacaagttgttaaccgct
acaataaagcaagtgttggcaaaagccattgaacagggcggcactacgttaaaagatttt
gcgcaaacagatggcaagcctggctatttcgcccaacaccttaatgtctatggccgaaaa
ggagagccatgcgaggcgtgtggtaaggcgatagaaagcaaagtaatcgggcagcgcaat
accttcttttgtactcgctgccaacgttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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