KEGG   Astyanax mexicanus (Mexican tetra): 103047681
Entry
103047681         CDS       T05042                                 
Symbol
lig3
Name
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    103047681 (lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amex03400]
    103047681 (lig3)
Enzymes [BR:amex01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103047681 (lig3)
DNA repair and recombination proteins [BR:amex03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     103047681 (lig3)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme FAD_binding_1
Other DBs
NCBI-GeneID: 103047681
NCBI-ProteinID: XP_007245342
Ensembl: ENSAMXG00000007489
UniProt: A0A8B9I105
Position
3:3950349..3969225
AA seq 1011 aa
MHSLCLCKTIKALSGAPLSALCRRVPLRQSLRRQPLSQCAQTLIPIWSFASKACGSLTLS
TPSRQFSLSSSAPFGGSWPVWQGDGPDMAEQRFCVEYAKRGTAGCKKCKDKIMKGLVRIG
KIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELINKH
VSDLAAKANATPKKKVQSKLNTSGQLSTPLADPTVNAPRKFSGFTATKAGSSSSDPGPSP
SKPTQGSTLSAQFCDPDHKDCLFREFRKLCAMVADKSSYNAKTEIIKNFLRKGSGGDKFK
GDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRILNCNQEEMVRDLEQGDVSETVRMFFDA
STSFPAATKSLLTIQEVDASLSRLAQLTKEDDQQAELQDIAKKCTGNDLKCYIRLVKHDL
KINSGAKHVLDALDPNAYDAFKASRNLGDVVDRVLRNQQEASNGTGPRKLLSVEATLMTP
VQPMLAEACKSIEHAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH
FKEFIPQAFAGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYF
NGVSLMDKPLCERRKFLHDNMIEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLK
DIKGLYEPGKRHWLKVKKDYLNEGAMADTADLVVLGGFFGSGSKGGIMSSFLMGCYDPDS
KKWCTVTKCSGGYDDATLARLQKELDVIKIGKDPSKIPGWLKIVKNYYPDFLIRDPQKAP
VWEITGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLPQLKELYRISKENCDFEV
TAGPSTSSKDDKGSSGGDSGSSSPSVSHGAPSTNKPKNGHTPKPVKSEPPSPAKRKLPAE
EQRAKKIKTEAVHSNGKNKPNAALAKTPNPQTEKTLLDIFTGVKLYLPETVPDFEKLRRY
FVAYDGELVPSYDAASATHTVAEPEEHSQAQKVTSNWIWECIRKRRVVPPC
NT seq 3036 nt   +upstreamnt  +downstreamnt
atgcatagtctttgcctttgcaagacaataaaagccctcagtggtgcacctttgtcagca
ctgtgtaggagggttcctctgcggcaatcactaaggagacagcctctatctcagtgcgct
cagactctgattccaatctggagttttgcttctaaagcgtgtggcagtttgactctttcc
actccatccagacagttcagtctctcgtcttcagcaccttttggtggatcttggcctgtg
tggcagggtgacgggcctgacatggcggagcagcggttctgtgtagaatatgccaaacgt
ggcactgcaggctgcaagaaatgcaaggacaaaatcatgaagggtctggtccgcatcggc
aagattgtgcccaacccgttcagcgagtctgccggagaaatgaaggagtggtaccatgtg
aagtgtatctttgagaagctggagcgagctcgggccaccaccaagaagattgaagacatc
actgatctggaaggctgggaggagcttcaggatgaggataaagagctaattaataagcat
gtttcagatttagctgctaaagcaaatgcaactccaaaaaagaaggttcaatccaaacta
aacaccagcgggcagttatcaacacctcttgctgatccaacagtcaatgcaccacgcaag
ttttctggtttcacagccacaaaggcaggttcgtcctcctcagacccaggcccctctccc
agtaaacccactcagggcagcaccctgtctgcacagttctgtgatccggaccacaaggac
tgccttttccgtgaattccgcaagctctgtgccatggtggctgataagtccagctacaac
gcaaagaccgagatcatcaagaacttcttaaggaagggttctggtggagataagtttaaa
ggtgacctctacctgacggtgaagctgcttcttccgggagtggtgaagagtgtttacaat
ctcaacgacaagcaaatagtcaagctcttcagtcgcatcttaaattgcaatcaagaagag
atggtgcgcgatctggaacagggggatgtttctgagactgtgaggatgttttttgatgcc
agcacatcgtttcctgcagcaaccaagagtctcttgaccatccaggaagtggatgcctcg
ctaagtcgcctggctcagctgaccaaagaagatgaccagcaggcagagctccaggacatt
gctaagaaatgtactggaaatgacttgaaatgttacattcgacttgtcaaacacgatctg
aagattaattctggggctaaacatgttctggatgctttggaccccaatgcttatgatgcc
ttcaaagcctcccgaaaccttggcgatgtggtcgacagggttctgcggaaccagcaggag
gcatctaacgggaccggaccgaggaagctgctgagtgtggaggctacacttatgacccct
gttcaacccatgttggcagaagcatgtaaatccattgagcatgctatgaagaagtgccct
aatggaatgtactccgagatcaagtacgatggtgagcgtgtgcaggtgcacaagaacgga
gatcactttagctactttagccgcagtctcaaacccgtgctgcctcacaaggtggcacat
tttaaagagtttatacctcaggcttttgctggtggccacagcatgattctcgatgctgaa
gtcctcttgattgacaccaagaccagcaaacctctgccttttggaacattaggagttcac
aaaaaagcagccttccaagatgcacaagtcggcctctttgtgtttgactgtatttacttt
aatggagtcagtcttatggacaagccgctttgtgagagaagaaaatttctccacgacaac
atgattgaagttcctaacaggattctgttttcagaaatgaaacatgtcacaagagctgct
gatctggctgaaatgatcacacgggtcatcagagagggacttgaaggcctggttcttaaa
gacattaaggggctgtatgaacctggaaaacgtcactggttgaaggtgaagaaagactac
ctcaatgaaggagccatggctgacactgcagacctggtggttttagggggattttttggt
tcaggctccaaaggtggaataatgtccagttttcttatggggtgctatgacccagactcg
aagaagtggtgcactgtgactaaatgctcaggaggatatgatgacgccactctagctaga
ctacagaaggagttggacgtaattaaaattggcaaggatcccagcaagattcctggctgg
ttaaaaattgtcaagaactactacccagattttctcatccgggatccacagaaagcacca
gtgtgggagatcacaggagcggagttctctaagtcagagatgcacacggccgacggcatc
tctattcgtttccctcgctgcactcgcatgcgtgatgacaaggactggaagacggccacc
aatcttccacagctcaaggagctgtaccgtatctcaaaagagaattgtgattttgaggtg
accgcaggaccttccacaagcagtaaagatgacaaagggtcctcaggaggagacagtgga
agcagctctccttctgtgtcccatggagcaccgagcacaaataaacccaaaaatggtcac
actccaaagccagtaaaatcggaacctccatctcctgcaaagagaaagctgcctgctgag
gaacagcgtgcaaagaagatcaagactgaagcagttcacagcaacggaaagaataaacca
aatgctgctttagcaaagacccctaatccacagactgagaagactttgctagacatcttc
actggtgtaaagctctacctcccagaaacggtgccggactttgagaagctgcggcgctac
tttgtggcgtacgacggagaactggtgccttcgtatgatgcagcctctgctactcataca
gtagctgaaccagaggagcacagccaggcccagaaagtcacctccaactggatctgggag
tgtatccgcaaaaggagagtggttccgccttgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (40)   

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