KEGG   Alligator mississippiensis (American alligator): 102571442
Entry
102571442         CDS       T03087                                 
Symbol
DDX42
Name
(RefSeq) DEAD-box helicase 42
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:5.6.2.7]
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102571442 (DDX42)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:amj03041]
    102571442 (DDX42)
Enzymes [BR:amj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     102571442 (DDX42)
Spliceosome [BR:amj03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    102571442 (DDX42)
 Complex B
    102571442 (DDX42)
 Complex C
   U2 SnRNP specific factors
    102571442 (DDX42)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA DUF4238 ERCC3_RAD25_C DUF460
Other DBs
NCBI-GeneID: 102571442
NCBI-ProteinID: XP_006271624
Position
Un
AA seq 974 aa
MNWNKGGPGTKRGFGFGGFAIAPGKKEEPKLSQQSHSAFGTAGSSAGFGKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKSGDSDSEDDPLEAFM
AEVEDQAARDMKRLEDKDKERKNTKGIRDDIEEEDDQEAYFRYMAENPNAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITTLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELELGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFLS
GPTKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNSNVMSNYEAYKPSTGAMGDRLSAMKAAFQSQYKSHFIAASLNNQ
KSGSSTAGASGWTSAGSLNSVPTSSAQQSAANPESQLATAAAKGIPGFTSAGNLSSVPSF
PPIGIQGYNNVNTSSSNREGGPGIGGPGIGSPGIGGPGIGSPGIGGPGFGSGRERYNDNR
SGRHSDSPRHGDGGGRHSDGQRHGDGGGRHSDSYRHGDGRHFYKEKAAEDSHRHSESRHS
AGGSGSSRHSDNRNNGDPRNSGDPRNSNEGRINESRNIESKNSESRKEGGNRDNKSDGFA
VPEPPKRKKSRWDS
NT seq 2925 nt   +upstreamnt  +downstreamnt
atgaactggaacaaaggtggacctggcaccaagagaggctttggttttggtgggtttgcc
atagcccctggaaaaaaagaggaacctaagctctctcaacagtcccatagcgcttttgga
acagctggctcttctgctgggtttgggaagtcagggccacctcagctcccttccttctac
aaaattggttccaagagagctaactttgatgaggagaacgcgtactttgaggatgaagaa
gaagattccagcaatgttgatttgccatacattcctgcagagaattcccccactcgccag
cagtttcattccaaatcaggagattctgacagtgaagatgatcctctggaagcattcatg
gctgaagtggaggatcaagctgctcgggacatgaagagacttgaagacaaagacaaggaa
agaaagaatacaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
ttccgctacatggcagaaaaccctaatgctggtgtggtacaagaagaggaggaagataac
ctggagtatgacagtgatggaaatccaattgcgccatccaaaaaaatcatcgatccactt
ccacctattgatcattcagagattgaataccctccatttgagaagaacttctatgatgag
cacgaagagattaccaccctcacaccccagcaggtggtggagctgcgacataagttgaac
ctgcgggtctctggtgctgctcctccaagaccgggcagtagttttgcccattttggattt
gatgaacaacttatgcatcagattaggaaatctgagtatacccagcccactcctatacag
tgtcagggtgttccagttgcactgagtggcagagacatgatcggcatagctaagactggc
agtggcaaaacagcagcctttatttggccaatgttgatccacatcatggatcaaaaagaa
ctggaactgggagatggtcccattgcagtgattgtgtgcccaaccagagagctttgccaa
cagatccattcagaatgcaagcgctttggtaaagcatataacttacgctccgtagcagtg
tacggtggtggaagtatgtgggaacaagcgaaggctctgcaggaaggagcggagatagtg
gtctgcacaccaggtcgcttgattgatcatgtgaagaagaaagctaccaatcttcagagg
gtctcgtatcttgtatttgatgaagcagatcgaatgtttgatatgggttttgaataccag
gtcagatcgatcgccagccatgtgcgtcctgacagacaaactctcttgttcagtgctact
ttccgaaagaaaattgagaaattggcaagagatatcctgatcgacccaattcgagtggtt
cagggagacattggagaggcaaatgaagatgttactcagattgtagagattttcctctct
ggccctaccaagtggaactggctgactcgacgcctggtggagttcacttcttctgggagt
gttctcctgtttgttaccaagaaagcaaatgcagaagagctagccaataatctcaagcag
gagggtcataatctaggcctccttcatggcgatatggaccagagtgaaaggaataaagtc
atttcagaatttaagaaaaagggaatcccaatactggttgctactgatgtggcagctcgt
ggtttggatattccttctattaagactgtggtcaattatgatgtggcccgggatatagac
acccacacccacagaattggacgtaccggcagagcaggcgagaaaggagtagcatacact
ttgctgactcccaaagacagtaattttgctggtgatcttgtcagaaatctggaaggtgcc
aatcagcatgtttccaaagagctgttggaccttgcaatgcagaacccctggttccggaaa
tcccgtttcaagggaggaaaaggcaagaagctgaacattggaggtggtggcttgggatac
cgtgaacgccccggcctgggctcagaaaattctgaccgtgggaacaacagcaatgtgatg
agtaattatgaggcatacaagccatccactggggcaatgggagacagactgtctgcaatg
aaagcagcatttcagtcccaatataagagtcatttcattgcagccagcctgaacaaccaa
aaaagtggtagctccaccgctggtgccagtggctggaccagtgctgggagtttgaattca
gtaccaacgagttcagcacagcagagtgctgcaaatcctgaaagccagcttgctacagct
gcagcaaaggggatccctgggttcaccagtgctgggaatctgagcagcgttcccagcttc
ccacccattgggattcagggatataataacgtgaacaccagcagcagcaaccgagaaggt
ggccctggcatcggtggccctggcatcggcagccctggtatcggtggccctggcatcggc
agccctggtatcggtggccctggcttcggtagcggcagagagagatacaatgacaatcgc
agcgggcgccacagtgacagtccgcgccacggtgatggaggtgggcgccacagtgacggt
cagcgtcatggagatggaggtggccgccacagtgatagttaccgccatggagacggacga
catttctacaaggagaaagcggcagaggacagccatcgccacagtgaaagccggcattct
gctggtggaagcggcagcagccgacacagcgacaaccgtaataatggtgaccccaggaat
agtggtgacccccggaatagcaatgaaggaaggatcaatgagagcaggaacatcgagagc
aagaacagcgagagcaggaaagaaggtggcaaccgagacaacaagtcggatggttttgct
gtcccagagcccccaaagcgcaagaagagtcgatgggacagttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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