KEGG   Alteromonas macleodii Black Sea 11: AMBLS11_00265
Entry
AMBLS11_00265     CDS       T02260                                 
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
amk  Alteromonas macleodii Black Sea 11
Pathway
amk03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:amk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    AMBLS11_00265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amk03400]
    AMBLS11_00265
Enzymes [BR:amk01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     AMBLS11_00265
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     AMBLS11_00265
DNA repair and recombination proteins [BR:amk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     AMBLS11_00265
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS NFACT_N
Other DBs
NCBI-ProteinID: AFT76647
Position
63174..63983
AA seq 269 aa
MPELPEVEVSRLGVSPHLIGNTITQVVVRERRMRWPIPQEVSNVEGQTVTAVKRRAKYLL
IETATGTLILHLGMSGKLRVIDASTPTIKHDHVDIVLNTGKCLRFNDPRRFGAVLFQAPN
TQVAMLDNLGPEPLTDDFDDKRLFNMSRNRKGPVKNFIMDNAIVVGVGNIYANEALFLAG
IDPRRAAGNISAARYKSLTATIKQVLAKAIEQGGTTLKDFAQTDGKPGYFAQHLNVYGRK
GEPCEVCGKAIESKVIGQRNTFFCTHCQR
NT seq 810 nt   +upstreamnt  +downstreamnt
atgcctgaactaccagaagttgaagtaagccgtttgggcgtatctccacatcttattggc
aataccattacccaagtagtggtgcgtgagcgtaggatgcgctggccaataccacaagag
gtgtcaaacgttgaagggcagactgttacagcagttaaacgccgcgccaaatatttactt
attgaaactgccacaggtacgctaattttacacttaggcatgtcgggtaaactacgcgta
atcgatgcgtctacaccgactatcaaacatgaccacgtagacattgttctaaacacaggt
aagtgtttacgttttaacgaccctcggcgcttcggagcggtattatttcaagcgcctaat
acgcaagttgccatgcttgataatttaggcccagaaccgcttacagacgactttgatgat
aagcgtttgttcaatatgtcgcgcaatcgaaaaggccctgttaaaaacttcattatggac
aatgccattgtggtaggggtaggaaatatctacgcgaacgaagcactgtttttagctggt
atagacccgcgaagagccgcaggaaatattagtgcagcgcgctacaaatcactaaccgct
actattaaacaagtattggcgaaagcgattgagcaaggtggtacaacactcaaagatttt
gcacaaactgacggtaagcctggttactttgcgcaacacctaaatgtatatggaagaaaa
ggcgagccttgtgaagtgtgtggcaaagctattgaaagtaaggttatcgggcagcgaaat
acctttttctgtactcactgccaacgttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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