KEGG   Malaciobacter mytili: AMYT_1488
Entry
AMYT_1488         CDS       T05895                                 
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
amyt  Malaciobacter mytili
Pathway
amyt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amyt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AMYT_1488 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amyt03019]
    AMYT_1488 (pnp)
   03016 Transfer RNA biogenesis [BR:amyt03016]
    AMYT_1488 (pnp)
Enzymes [BR:amyt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     AMYT_1488 (pnp)
Messenger RNA biogenesis [BR:amyt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AMYT_1488 (pnp)
Transfer RNA biogenesis [BR:amyt03016]
 Prokaryotic type
  tRNA degradation factors
   AMYT_1488 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 KH_1 PNPase EAP30 S1_2 DUF5783 PCI KH_2 XH eIF3_subunit CTD9
Other DBs
NCBI-ProteinID: AXH15064
UniProt: A0A345J5I0
Position
complement(1465809..1467989)
AA seq 726 aa
MSTVCEFELNGKREFFEFNKVAKQSNGSVLAKLGNAVVLATVVSEFDNPVEEDFTPLTVQ
YVEKTYAAAKLPGGFIKRESKPSEFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADK
DVDLQVLSLNAASAALYTSNIPVKKSVAGVRIGKVEGEYIVNPTASQLEQSTLDLYVAGS
KEELLMIEMKAISNEEMVEVDIEAFTKVHKTNEMSEDDLVEAISLAQKVLNEVNTTYENG
FEIVCKEKKEVELVQFTIDEKIIEYVKENYSNNIKEAIKKLAKSERAVELKEVAKLISTD
TYSLENEISYSEIYEAVSIVKREIVRAMIVDEKVRADGRGLKDVRPICIETNILPSTHSS
CLFTRGETQALVVGTIAGPKDGQMYEVLTDKSTSMENFMVHYNFPGFSVGEAKPMFGVGR
RELGHGNLAKKALEATIDKDFSETIRLVSEILESNGSSSMATVCGGSLALKAAGIPISNL
VAGVAMGMVVEGNKYSVLTDIMGLEDHDGDMDFKVAGTKEGITALQMDIKLGGIELEVLK
EALLQAKEGRMHILGLMEEAAQEIVPSEALPLVEQFAIDPSKIMVIIGKAGATIKEIIEK
FSVSIDLDRDSGNVKVSGENKQNVLDACEHIKTISNNASSKKDNVKNLDFEKLYQVDEVL
EGKVERITDFGAFISLPKGGEGLLHISKISKERVNNVSDVLKVSDTVEIKVLNVKKDRIE
LASALL
NT seq 2181 nt   +upstreamnt  +downstreamnt
atgtcaacagtgtgtgagtttgaattaaatgggaaaagagagttttttgaatttaataaa
gtagcaaaacaatcaaatggttctgttttagcaaaattaggtaatgcagtagtacttgca
accgtagtaagtgaatttgataatccagtagaagaggattttactccacttactgttcaa
tatgttgaaaagacatatgcagctgcaaaattaccaggaggatttattaaaagagaatca
aaacctagtgaatttgaaactttaacttcaagagtaattgatagaagtttaagacccctt
ttccctaaaggatatgtatatcctactactattacagtaatggtacttagtgcagataaa
gatgttgacctacaagttttaagtttaaatgcagcaagtgcagcactgtatacttcaaat
attcctgtaaaaaaatcagttgcaggggtaagaatagggaaggttgaaggagaatatatt
gtaaatccaacagcttctcaattagaacaatctactttagatttatatgtagcaggttca
aaagaagaacttttaatgatagaaatgaaagctatttcaaatgaagagatggtggaagta
gatattgaagcttttactaaagttcataaaacaaatgagatgagtgaagatgatttagtt
gaagcaatttctttagctcaaaaagttttaaatgaagtaaatactacatacgaaaatgga
tttgagattgtttgtaaagagaaaaaagaagttgaattagttcaatttacaatagatgaa
aagattattgaatatgtaaaagaaaattattcaaataatataaaagaggctattaaaaaa
ttagcaaaaagtgaaagagcagttgagttaaaagaagttgcaaaactaatctcaacagat
acttactctttagaaaatgaaatttcatatagtgaaatatatgaagcagtttctattgta
aaaagagaaattgtaagagcaatgatagttgatgaaaaagtaagagcagatggtagaggg
ctaaaagatgttagaccaatttgtattgaaacaaatattttaccatcaactcactcttct
tgtttatttacaaggggtgaaactcaagctttagttgtaggtacaattgcaggacctaaa
gatggacaaatgtatgaagttttaactgataaatcaacttctatggaaaactttatggtt
cattataacttcccaggtttttcagttggtgaagcaaaacctatgtttggagtaggaaga
agagagttaggacatggaaatcttgctaaaaaagctttagaagctactattgataaagac
ttttcagaaacaattaggttagtatcagaaattttagaatcaaatggttcttcatctatg
gctactgtttgtggaggttctcttgcacttaaagcagcaggtatacctatttctaattta
gttgctggtgttgctatgggtatggttgttgaagggaataaatattctgtattaacagat
attatgggattagaagaccatgatggagatatggattttaaagttgctggaacaaaagag
ggaattactgctttacaaatggatataaaacttggtgggattgaattagaagtattaaaa
gaggctttacttcaagcaaaagaaggaagaatgcatattttaggacttatggaagaagct
gcacaagagattgttccaagtgaagcattacctttagtagaacagtttgcaattgaccca
agtaaaattatggttattattggaaaagcaggtgctactattaaagaaattattgaaaaa
ttctctgtatcaattgatttagatagagatagcggaaatgtaaaagtaagtggagagaat
aaacaaaatgttcttgatgcttgtgaacatattaaaactatttcaaataatgcttcttca
aaaaaagataatgtgaaaaatttagattttgaaaaattatatcaagttgatgaagtttta
gagggaaaagtagaaagaattactgattttggtgcttttatttctttaccaaaaggtggt
gaaggtttattacatatctcaaaaatttctaaagagagagtaaataatgtatcagatgtt
ttaaaagtgtcagatactgtagaaattaaagtattaaatgtgaaaaaagatagaattgaa
ttagcttctgcactattataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (23)   

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