KEGG   Asparagus officinalis (garden asparagus): 109845542
Entry
109845542         CDS       T05243                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109845542
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aof03041]
    109845542
Enzymes [BR:aof01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     109845542
Spliceosome [BR:aof03041]
 Complex C
  Other components
   Step II factors
    109845542
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N Helicase_C S1 DEAD AAA_22 AAA_19 AAA_30 nSTAND3 ABC_tran TsaE Sigma54_activ_2 SLFN-g3_helicase T2SSE PhoH AAA_16 Flavi_DEAD ATPase
Other DBs
NCBI-GeneID: 109845542
NCBI-ProteinID: XP_020270390
Position
6:49183875..49192527
AA seq 1169 aa
MVESAVDNGDGLKKLEYLSLVNQVCTELESNLGVGDKVLAEFITDLGRKSETVEDFDKKL
KENGAEMPDYFVKTLLTIIHAILPPKPKSKSKSDLKSQSSGLFHGLARPDDRQRVKNLQE
EILKEAEEKADAEARNREEEDRDRRHRDQPRDRDRDRDRDRDRRHRRDRDRYRGRGSDDE
RERDRYRGRGSDDEGGDFNSSREHPRRNSDEPELYRVYKGRVSRVMDTGCFVQIPELRGK
EGLVHVSQIATRRVVNVKEVVKRDQEVFVKVISFSGQKLGLAMRDVDQKTGRDLLPIRKT
SEDDALRANPLSGNSNGPTKRMGLSGIMITEEDESMPARRRPLKRMSSPEKWEAKQLIAA
GVMDVRDYPNFDEDGDGVLYQEEGAEEELEVELNEDEPAFLQGQSRFSMDMSPVKIFKNP
EGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGV
GLSAYDMPEWKKDAYGKALTFGQRSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGE
TGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFE
DCTGPETVIKYMTDGMLLREILVDENLSQYSVVMLDEAHERTIHTDVLFGLLKQLVQRRP
DLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYAKQPESDYLDAALITVLQIHL
TEPEGDILLFLTGQEEIDHACQALYERMKGLGKDVPELIILPVYSALPSEMQSRIFDPAP
PGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAG
RAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTTLQMKAMGINDLLSFDFMDPP
SPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTII
AMIQTQNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQS
RSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRRAIAAGYFFHAARKDPQEGYRTLVE
NQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFYKAADPTKM
SKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq 3510 nt   +upstreamnt  +downstreamnt
atggtggaatctgcggttgacaacggcgatgggctgaagaagctggagtacctatccctc
gtcaatcaggtctgtaccgagctcgaatcgaacctcggcgtcggcgacaaagtgctcgct
gagttcatcaccgacctcggccgcaaatccgagaccgtcgaagacttcgacaagaagctg
aaggagaacggagccgagatgcccgattacttcgtcaagactcttctcaccatcatccac
gctattctacctcccaaacccaaatccaagagcaaatccgatctcaagagccagtcttca
ggtctttttcatggcctcgcgaggcctgacgaccggcagcgggtgaagaatttgcaggag
gagattttgaaggaagctgaggagaaggctgatgcggaggcgagaaaccgagaagaagaa
gaccgtgatagacgccatcgagatcagcctcgtgatcgggatagagatcgggatcgtgat
agagacagaaggcataggagagatagggatagatatagaggtagaggcagcgatgacgaa
agggagagggatagatatagagggaggggcagcgatgatgaagggggtgatttcaatagc
agtagagaacaccctagaagaaattcggatgagccggagctttacagggtgtataaaggt
agggtttcacgagttatggacacgggttgctttgttcagataccggagttgagggggaaa
gagggattggttcatgtttcgcagattgctactagaagggttgtcaatgtgaaggaggtg
gtgaagagagatcaagaagtgtttgtaaaggtgatatctttttctggtcagaagcttggt
ttggcaatgagagatgttgatcagaagacaggaagggatttgcttccgataagaaaaact
tcggaggatgatgcattgagggcaaaccctttgagtggaaatagcaatggaccgacgaaa
aggatggggctatcagggattatgattactgaagaggatgagagcatgccggcaagaaga
aggccattgaagagaatgagctcgccggagaagtgggaggcaaagcagctgatagctgct
ggagttatggatgttagagattacccaaatttcgatgaggatggtgatggggttttgtat
caggaggaaggagctgaggaggagctcgaggttgagctcaatgaggatgagcctgcattt
ttgcaaggccagagtaggttttccatggatatgtcgccagtgaagatatttaagaatccc
gaaggttcgttgagcagagcagcggctttgcagtcagcccttattaaggaaaggagagag
gtgagagagcagcaacaacgaactatgttggattcaatcccaaaggatcttaacaggcca
tgggaagatccaatgcccgagacaggtgagaggcatctggctcaggagttgagaggtgtc
gggttatcagcgtatgacatgccggagtggaagaaggatgcttatggtaaagctttaact
ttcgggcagagatcgaagctttcaattcaagaacagaggcagagccttcctatttataag
ctgaagaaagagcttgtacaggctgtgcatgataaccaagttttggttgtaatcggggag
actggatcaggaaagactacacaagtgacacagtatttggccgaggctgggtatactaca
agagggaagatcgggtgtactcagcctcgtcgagtggctgcaatgtctgtagcaaagagg
gtggcagaggaatttgggtgtcggttaggagaggaagtcggttatgcgattaggttcgag
gattgcactgggccagaaactgtgatcaagtatatgacagatggtatgcttcttagggag
attttggttgatgaaaatctctctcagtattcagttgtaatgcttgacgaggctcatgag
aggacaatacacactgatgtgctttttgggttgttaaagcagcttgtacagcggaggcct
gacctaagattgattgttacttctgctacgctggatgcagaaaagttctcgggttatttt
ttcaattgtaatatctttaccattcctggcaggacctttcctgttgagatactttatgcg
aagcagccagagagcgattatctagatgcagcattgatcactgtgcttcagatacatctt
actgaacctgaaggtgacatccttctcttcttgactggtcaagaagaaattgatcatgct
tgtcaggctctttatgagaggatgaaaggcttaggtaaggatgtgcctgagttgataatt
ttgcctgtttacagtgctctacccagtgaaatgcagtccaggatttttgatcctgcacct
ccgggcaagaggaaagttgtagtggccaccaatatcgcagaagcatccttgactattgat
gggattttttatgttattgatcctggttttgcaaagcaaaatgtgtataatccaaagcaa
ggacttgattcacttgtgattactcctatttcgcaggcttcagcaaagcagcgagctggc
cgagctgggcgtactgggccagggaaatgctaccggctgtacactgagagtgcctaccgc
aatgagatgtcacccacctccattcctgaaattcaaaggattaatcttgggatgacaact
cttcaaatgaaagctatggggataaatgacttattatcttttgattttatggatccaccg
tcacctcaggcactgatatctgctatggagcagttgtacagtttgggagcattggatgaa
gaaggtcttctcacgaagttgggtagaaaaatggctgaattcccactggatccaccattg
tcaaagatgctcctggctagtgtagatttgggctgcagtgatgagatcttgacgattata
gcaatgatccagacacaaaatatcttctataggccaagggaaaaacaagcacaagcagat
caaaagagagccaagtttttccagccagaaggtgatcatttaacgctacttgctgtttat
gaggcctggaaagccaaaaatttttctggtccttggtgctttgaaaattttgtccagtcc
cgatcactaaggagggcgcaggatgtgaggaaacaacttcttagcatcatggataagtac
aagctagatgtcgtcagtgctggtaaaaatttcaccaaaataagaagagccattgcagct
gggtattttttccacgcagccagaaaggatccccaggagggctacagaaccctagtagag
aaccaaccagtatatattcacccgagcagcgctctattccagaggcagccagactgggtg
atatatcacgagctagtcatgactaccaaagagtatatgcgagaggtcacggttattgat
cctaaatggttggtggaattagcgccaagattttacaaggcggcggatccaacaaagatg
agcaagagaaagagacaagaaaggattgagcccctttatgaccggtatcatgagccaaat
tcatggaggcttagcaagcgtcgggcttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (19)   
   Pfam (19)   
All databases (67)   

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