KEGG   Arthrobacter sp. PGP41: C3B78_01940
Entry
C3B78_01940       CDS       T05450                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
arth  Arthrobacter sp. PGP41
Pathway
arth03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:arth00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C3B78_01940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:arth03400]
    C3B78_01940
Enzymes [BR:arth01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C3B78_01940
DNA repair and recombination proteins [BR:arth03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C3B78_01940
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2 RNA_ligase
Other DBs
NCBI-ProteinID: AUZ33360
UniProt: A0A2L0QUQ2
Position
complement(416905..419397)
AA seq 830 aa
MPAAKERVRVAGRELTLTNLDKIIYPETGTTKADVLAYYAAVAHVLVPAAYNRPATRKRW
VNGVGTADKPGEVFFQKNLEDSAPGWLPRAAITHKDRTIYYPMVNDPATLTWFGQINSLE
IHVPQWQVDSHGNQLNPDRLVLDLDPGEGAGLEACVEVALLARTILQDVGLDPVPVTSGS
KGIHLYAALDRSQTSDQISAFARELARALEADHPDLAVSDMKKTLRKGKVLVDWSQNNAA
KTTIVPYSLRGRPTPMVAAPRTWEEISSPGLSHLDYKAVIRRVQEGTDPFAAVDNAGNDP
RLEKYRSMRDPGKTPEPFTGTAGSGNTFVIQEHHASRLHYDFRLEHEGVLVSWALPKGVP
ESGGKNHLAVQTEDHPLDYGSFEGTIPKGEYGAGEVTIWDHGTYELDKWINGREVIATLT
GSEGGGLGGTRKFALIHTGRGQGKDSEGQWLIHLMEPGRPGGRRRHAPPREGQEEPPGTE
SAHEEPHGAPNQDEPRHDELRQEALDKNVAVRPGEYRPMMAASGDAADLEGSSWQFELKW
DGVRAILVGDEDSVRIFSRNGNDVTTTYPELADRTCWPARPFVADGEIVAIGAAGRPDFG
LLQGRMKLTRPAEVARARTAIPVQLMLFDLLHDDGTDLRRLPLAKRRQRLEAFFTASACP
AGLSPVLEDRVDHILESARELGLEGVMAKRTDSRYVSGQRTRTWIKLKVEQTQEVVVGGW
RPGKGGREDTVGSLLVGIPDGTKLQYAGRVGSGFSGRELAELRQTVDRLARKTSPFLDVP
RPDAADAHWIAPELVGEVTYSEWTGTGRLRHPVWRGWRLDKDPAEVVREG
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgcccgccgctaaggagcgtgtccgggtggcagggcgggaactgaccctcaccaacctg
gacaagatcatctatccggaaacgggcaccaccaaggcggatgtcctggcctactacgcc
gcagtggcccacgtcctggtcccggcggcgtacaacaggccggccaccaggaaacggtgg
gtgaacggcgtggggaccgccgataagcccggcgaggtgttcttccaaaagaaccttgag
gattcggctccgggctggctcccccgggcagccatcacccacaaagaccgcaccatctac
tatccgatggtcaacgaccccgccacccttacctggttcggacagatcaactccctggaa
atccacgtcccgcagtggcaggtggactcccacggcaaccaactgaaccccgacaggctg
gtcctggatttggaccccggcgaaggcgccggcctggaggcgtgtgttgaagtagccctc
ctggcgcgcactatcctccaggacgtgggcctggaccccgtcccggtgaccagcggcagc
aagggcatccacctgtacgccgccctggaccggagccagacctccgaccagatctccgcc
ttcgcccgcgaacttgcccgggcccttgaggccgaccacccggacctggccgtcagcgac
atgaaaaagaccctgcgcaagggcaaggtcctggtggactggagccagaacaacgcggcc
aagacgacgatcgtgccgtactcgctgcgtggccgccccacccccatggtggctgcaccc
cggacctgggaggagatcagctcccccggcctcagccacctggactataaggcggtgatc
cggcgggtgcaggaaggcacggacccgttcgccgccgtcgataacgccggcaatgacccc
cggctggagaagtaccgctccatgcgcgatcccgggaagactccggagcctttcaccggc
acggcgggcagcggaaacacctttgtgatccaggaacaccacgccagccgcctgcactat
gacttccgccttgagcatgaaggcgtgctggtgtcctgggcgctgccgaagggcgtgcct
gagtccgggggcaagaaccacctggcagtgcagaccgaggaccatcccctggactacggg
agcttcgaggggactattcccaaaggggaatacggcgccggcgaggtgaccatctgggac
cacggaacgtatgagctggacaagtggatcaacggcagggaagtcattgccaccctcacc
ggttccgaaggaggagggctgggcgggaccaggaaatttgcgctcatccacacggggcgg
gggcagggaaaggattccgagggccagtggcttatccacctcatggagcccgggcggcct
ggcggacgacggcggcacgcaccgccccgggaagggcaggaggagccgcctggtacggag
tcggcccacgaggaaccacacggggcgccgaaccaggatgagccgcgccatgatgagctg
cgccaggaggcactggataaaaacgttgcggtgcggcccggggaatacaggccgatgatg
gccgcctccggagatgcagcggacctggagggcagcagctggcagttcgaactcaagtgg
gacggggtccgcgccatcctcgtgggagacgaagattcggtacggattttcagccgcaac
ggcaatgatgtcaccaccacttaccctgaacttgcggaccggacctgctggccggcccgg
ccgttcgtcgccgacggtgagatcgtcgccatcggcgcggcaggaaggcccgatttcggg
ctcctgcagggaaggatgaagctcacccggcccgccgaggtcgcacgggcccggactgcc
attcccgtgcagctgatgcttttcgacctgctgcacgacgacggaacggacctccggagg
ctgccgctcgccaagcgccggcaacggctggaggccttcttcaccgcatcagcctgcccc
gcggggctttctccggtccttgaggaccgggtggaccacatcctggagagtgcccgggaa
ctgggcctcgaaggggtgatggccaagcggaccgacagccgctacgtgagcgggcagcgg
acccgtacctggatcaagctgaaggtggagcagacgcaggaggtagtggtgggcggctgg
cgccccggaaaaggcgggcgggaggacaccgtaggctcactgctggttggcatcccggac
gggacaaagctgcagtacgcagggcgggtgggcagcggcttcagcgggcgggaacttgcc
gagctccgccagaccgtggaccggctggcccggaagacctctccgttcctggacgtaccg
cgcccggacgcggcggacgcccactggattgcccccgaactggtcggcgaagtgacctac
agcgagtggacgggtaccgggaggctgcggcaccccgtgtggcggggctggcggctggac
aaggacccggcggaggttgtgcgtgaaggctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (23)   

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