KEGG   Arabidopsis thaliana (thale cress): AT5G27680
Entry
AT5G27680         CDS       T00041                                 
Symbol
RECQSIM
Name
(RefSeq) RECQ helicase SIM
  KO
K10900  werner syndrome ATP-dependent helicase [EC:5.6.2.4]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ath03032]
    AT5G27680 (RECQSIM)
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT5G27680 (RECQSIM)
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AT5G27680 (RECQSIM)
DNA replication proteins [BR:ath03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    AT5G27680 (RECQSIM)
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     AT5G27680 (RECQSIM)
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind ResIII UBA
Other DBs
NCBI-GeneID: 832830
NCBI-ProteinID: NP_001330794
TAIR: AT5G27680
UniProt: Q9FT69
Position
5:complement(9793745..9799149)
AA seq 858 aa
MDLSSDQLVMKIVEMGFEKLDALEAVKAVGGKSCDDAVEYILKGNHRTGGFKPASLLCSS
GSNKILGKRAMPSSFSSSESKRQSSLLDHFRSVNQNKKKGDTFGTVEVDSQLETVSEHSE
EVRKSLAPVFMESSCFPEGQLLNGCSEASSSWEKRVNSILRNRFGISSLRSFQREALSTW
VAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLSRHKVSACFLGS
GQLDNCIEEKAMQGMYQIIYVCPETVVRLIKPLQKLAKTHGIALFAIDEAHCVSKWGHDF
RPHYRKLSVLRENFCASNLEFLEYDVPIMALTATATVNVQEDILESLHLSKETKIVLTSF
FRPNLQFSVKHSRTKFASSYAKDFQNLVDLYSEKKNSTGKKLAVISRESEEQTDFGSHDS
ENIHETDYDEDEEDQENSLAKKNSSNGKELSEAYLEDETDIFQSVDDWDVACGEFCAMPS
CELLEIPVPSEKQKDLEGLTIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVH
QDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY
ADLSRAPTLLPSRRSKEQTEQAYKMLSDCFRYGMNTSQCRAKILVEYFGEEFSSKKCNSC
DVCTEGPPELVDVREEANLLFQVITAFHLQVDNDSEHAPYEDYGLGNSKQNKLSHKPNLL
FFISKLREQCEKFKETDCLWWKGLARIMEAEGYIKEMDNKDRRVEIKFIQPTEKGKKQLD
FQDDKPLYVYPEADMLLSLKQDRTYSGFSEWGKGWADPEIRRQRLERRERKPRRERKPRK
KRTRGRSSTKLHPWRSKE
NT seq 2577 nt   +upstreamnt  +downstreamnt
atggatttgtcttctgatcaactcgtgatgaagattgttgaaatgggttttgaaaagttg
gatgctttggaggctgtaaaagctgtaggtggtaagtcatgtgatgatgctgttgagtat
attttgaagggaaatcatagaactggtgggttcaagccggctagtttgctatgttcttca
gggagtaataagattcttggtaaaagagctatgccatcttcgttttcttcttcggagtca
aagcgtcagtctagtttgcttgaccattttagatctgtgaaccagaacaagaaaaaaggc
gacacctttgggactgtagaagtggactctcagttagaaacggtgtctgagcattcagaa
gaggtgagaaagtctttagctccagtgtttatggagtctagttgttttcctgaaggacaa
ttgttgaatggttgctcagaggcttcatcatcgtgggagaaaagagttaattctatacta
cgaaaccggtttggtatttcatccctgagaagtttccaaagagaggctttgtcaacatgg
gttgcgcacaaggactgtcttgttctagctgcaacgggatctgggaaatctctttgcttc
cagattcctgcattattaacgggaaaagttgttgtcgtaatttcgcctttgataagcttg
atgcatgatcaatgcctcaagctatcaaggcacaaagtctctgcttgttttcttggttca
ggccaacttgataattgcatagaagagaaggcaatgcagggaatgtatcagatcatatat
gtttgccctgagacagtggtccgactgattaaaccactccagaagcttgcaaagactcat
ggaattgctctttttgcaattgatgaagcgcattgcgtatcaaagtggggacatgatttc
cgtccgcactacaggaaattatcggtgttgcgggaaaatttctgtgccagcaatttggaa
ttcttagaatatgatgtaccgataatggcattgactgcaacagccactgttaacgttcag
gaagatattcttgagtcacttcacctgtcaaaggaaacaaaaattgtacttacttcattt
ttcaggccaaatctacaattttctgttaaacatagtcgaaccaagtttgcatcttcatat
gcaaaggacttccaaaacttagttgacttatactctgaaaagaaaaactctaccgggaaa
aagctagcagtaatctcacgagagtcagaggagcagactgattttggttctcacgattct
gaaaacatccatgagacggattatgatgaggatgaagaggatcaagaaaactccctggca
aagaaaaacagttcaaatgggaaagaattgtcagaagcgtatctggaagatgaaactgac
attttccagagtgttgatgattgggatgtggcttgtggcgagttttgcgcaatgccttct
tgtgaactcctggaaatacctgtcccttctgaaaagcaaaaggatttagaaggactgaca
atcatatacgttcctacaagaaaggagagtgtcaacattgctaagtatctttgtggggtt
ggactgaaagctgcagcttataatgcatcgttgccaaaaaaacatctcagacaagtgcac
caggactttcacgataataagctgcaggttgttgttgccacaattgcgtttggaatggga
attgacaagaaaaatgttcggaaaatcatacattatggttggctgcagagcttggaagca
tactaccaagaagctggtcgagctggaagagatggcgaattggctgagtgtgtgctctat
gctgatctatcgagagcaccaacgcttttgccaagccgtaggagcaaagaacagacagag
caagcatacaagatgctatctgactgtttcagatatggaatgaacacttcacaatgtcgg
gccaaaatacttgtggagtactttggggaggaatttagttccaaaaagtgtaactcatgt
gatgtttgcactgaagggcctccggagctagtagatgtacgagaggaagctaatcttttg
tttcaagtaatcactgcttttcatttgcaggtagacaatgactctgagcatgcaccatat
gaagattatggactcggcaacagcaaacaaaataaattatcccacaagccaaatcttctg
ttcttcatcagtaaactcagggaacagtgtgaaaaattcaaggaaacagattgtctttgg
tggaaaggtcttgcccgtatcatggaagccgaaggatacatcaaagagatggataacaag
gatcgtcgagttgagattaaattcatacaaccaacagaaaaagggaagaaacaactagat
ttccaagatgacaaaccactctatgtttatccagaagccgacatgctactttcgttgaaa
caagatagaacatacagtggattctctgaatggggaaaaggatgggcagatccagagatc
cggcgccagcggttagagagaagagaaagaaagcctcgaagagaaaggaaaccccgaaaa
aaacgaacacgaggacgttcttcgacgaagttacatccatggagaagcaaagaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (8)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (5)   
   Pfam (5)   
All databases (51)   

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