KEGG   Amborella trichopoda: 18439576
Entry
18439576          CDS       T02990                                 
Name
(RefSeq) probable RNA-dependent RNA polymerase 1 isoform X1
  KO
K11699  RNA-dependent RNA polymerase [EC:2.7.7.48]
Organism
atr  Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:atr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:atr03036]
    18439576
Enzymes [BR:atr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.48  RNA-directed RNA polymerase
     18439576
Chromosome and associated proteins [BR:atr03036]
 Eukaryotic type
  Gene silencing
   RNA interference (RNAi) pathway
    RDRC (RNA-directed RNA polymerase complex)
     18439576
SSDB
Motif
Pfam: RdRP RRM_1
Other DBs
NCBI-GeneID: 18439576
NCBI-ProteinID: XP_011625384
Position
Unknown
AA seq 1140 aa
MSEGGRTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKSKPNSRVFAIVQFTTS
KSAEVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFA
ILWSNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQ
GAPRIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTR
IPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGF
LVGPTLDTEFYNLLNGLPSPFVERSLEDISRLTNCCLEPAKWLQEQYKKYRNLPRRPSPA
AISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRS
TDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPIDG
ITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDIKNGKYVFSDG
IGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSMRKYSSNN
TKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPESAFEALE
LMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNGRSMMGCL
DETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNPCLHPGDV
RILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPCHQGTPME
YEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEPMKADSTPCVDLANL
FSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIGKLFREVKDLPPHTSAI
TSFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMDHYGIKTEAEIVSGNIL
SLAKSFTKRRDAEAIALAMRSLRKEVRGWFKEKRSVVDEGDYSLDDDVYAKASAWYHITY
HPEYWGSYFEEDGRNRAHFISFPWCIYDKLIHIKRHRIGRGRNSRSSSLASTMERTLMLS
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtctgaaggagggagaacagttcaagtttcagggtttcctcaaggcacatgtgctgaa
gcagttaaaaagtttcttgaaagtatcacaggctttgggactgtatatcacctcaaaatt
aggattcacaaatctaagccaaattcaagagtatttgccattgttcaatttacgacaagc
aagagtgctgaagttatctactctcttgctccacaacccaagagtctatattttggaaat
tcttatgtaattgttcggtacatggagaatgatatagtccccaatccaagagttacatat
cacgttttagagagtattcagttgtactttggtaaccagatttcagaagagtcttttgct
attctatggtccaatactaatgtcaaggttgaatttggttttggtctaaagaaaatattc
ttctacttggcccatactggtgtcgactataaactggacctctattacgagaacatttgg
caaatccagttgcgacgcccaggtacggaaggcacaagataccttgttcttcagatgcaa
ggagcccctcggatttttcagaaacctctctcattttcatctgatatttatgatagccca
ctttttaattactacaaagattttccagatgaacaatgggttaggagtatagattttact
ccatcttgcagcatagggcagtcttcgtctttgtgtttggcccttccgaatggaaccagg
attccgaatattcgtgagaactttgcatattataaagaaattggaggtgcattcaatctg
aaaacgggttcttctttttcacactcactgcatctggtcccaattgttcatcccccagac
cagattaagctgccctacaaaatcttgtttagggtaaattccctggttcaaaatgggttt
ctcgtgggccccacacttgatactgaattctataatttgctcaatgggcttccatctcct
tttgtggagcgctctcttgaggatatctcccgtttaacaaattgttgtttagaaccagca
aagtggctccaagaacagtataaaaaatacagaaacttgcctaggcgcccttctccagct
gctatatctttggagcctggcttggtttatgtgcacagggttcaagtgaccccttcaaag
gtgtacttctatggacctgaagttaatgtttcaaatcgagtgctgcgtcagttctccaac
tacatcgataacttccttcgcatctctttcatcgatgaggacttcggcagcattcgatca
actgatttatccaagcgaatggcttctggggctgaggaaaagcataccactgtttatggc
agagtattgtcgactttgaaaaatgggatagtgattggtgataagaaattcgagtttctg
gctttctcatcaagccaattacgtgataattcggcttggatgttttcccctattgatggt
atcactgcagctaatattagacaatggatgggagatttcagtggtattcgaaatgtggca
aaatgtgcagcaagaatgggtcagtcatttggctcttccacagaaactctgaatgttaaa
cctgaggaagttgagagaataagtgacataaagaacgggaaatatgttttctctgatggg
atagggaaaatctctttggagttcgcgaagaaagttgccttgaagtgcggttgtagtgag
aagacaccctctgccttccaaattagatatggtgggtataaaggagtcgttgcggtggat
ccaacgtcacgatacaagctctccttgagagggagcatgaggaagtattcatctaataac
acaaaattggatgtcttggcatatagcaagtttcagccttgttttttgaaccgtcaggtt
atcactcttctatcaaccttgggggttcaagataatgtctttgagacaaagcaaaaggat
gcagtctcacaattggacaaaattcttgtggacccagaaagtgcatttgaggctcttgag
ctcatgtcccctggtgagaatgttaacgttcttaaagagatgttgttttgtgggtattta
ccagattcagagcctttcctttcaatgatgcttcagacttttaggggattaaagttgtca
gaacttaaaacaaagacaaggatatttattccaaatgggagatcgatgatgggttgtttg
gatgaaactggaattcttgaatatgggcaagttttcgtgcaattttctgccattggtaat
agaagattacatgaatttggtctctcaaagataaatgagagtgggtctgaccaaagagtt
cgtgttgtggttggtaaagtcatagtggctaaaaacccctgccttcaccctggagatgtg
cgtatcttgacagccattgatgtgccagccttgcaccatatggtcaattgcgttgttttt
ccacaaaaggggaagaggcctcatcccaatgagtgctcaggaagtgatttagatggtgat
atttactttgtgagctgggacccaatgcttattccatgtcatcaaggcacaccaatggag
tacgagccagcaccaaataatgatttggatcatgaagtcacaattgaggagattgaagaa
tacttcactaactacatgatcaacgacagtcttggcatcatagcaaatgctcacacagtc
tttgcagacaaggagcctatgaaggctgatagcaccccttgtgtagatcttgcaaacctt
ttctcagttgcggtggacttcccaaagactggtgtcccagctgacataccccaacatctc
tatgtcaaagagtatcctgacttcatggacaaaaccgataaacctacttatcaatctaga
cgagttattgggaagctttttcgagaagttaaggacttgcctcctcacacaagtgcaata
acttctttcactaagtcagtggctttgaagagctatgatctggacatggaggtagacggg
tttgagctttacttagatgatgcccattggtacaaaagtgagtatgattttaagcttgcg
ggtctcatggatcactatggtatcaaaactgaggctgaaattgtcagtggaaacatactt
agccttgctaaatcttttactaaaaggagggacgcagaggccatagcattagccatgagg
tctcttaggaaggaggtgagaggttggttcaaagaaaagaggagtgtggttgatgaaggg
gattactcgcttgatgatgatgtgtatgccaaggcatcggcatggtatcacattacgtac
catccggaatattggggaagctatttcgaagaggatggaaggaatcgagcacattttata
agtttcccgtggtgcatttatgataaattgattcatataaagcgccataggattggaaga
ggaaggaactctcgatcatcatctcttgcatccaccatggagaggaccctaatgttgagt
tga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (39)   

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